ngs-docs

Pinned Repositories

2015-nov-adv-rna
Language:Python18 19 13
2015-nov-docker
Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html
14 19 04
2016-bids-docker
Language:Shell15 17 13
2017-cicese-metagenomics
Language:Jupyter Notebook18 4 015
2017-dsi-docker-may
16 2 01
2017-ucsc-metagenomics
Workshop materials for shotgun metagenomics
Language:Jupyter Notebook36 9 023
2018-cicese-metatranscriptomics
repo for cicese metatranscriptomics workshop, nov 2018
Language:R14 5 27
2021-GGG298
Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
Language:Python12 3 36
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Language:HTML104 27 69129
ngs-notebooks
Language:Python26 27 010

ngs-docs's Repositories

ngs-docs/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Language:HTML104 27 69129
ngs-docs/2023-snakemake-book-draft
A DRAFT, early stage book on snakemake.
Language:Python11 3 23
ngs-docs/2020-ggg-201b-rnaseq
Language:HTML4 4 18
ngs-docs/2021-august-remote-computing
Remote computing workshops in August 2021
Language:Shell4 8 182
ngs-docs/2022-GGG298
Winter 2022 - Tools for Data Intensive Research at UC Davis.
Language:Python4 3 02
ngs-docs/2023-june-datalab-collaboratory
Workshop schedule & ancillary information for June 2023 DataLab Collaboratory
4 1 8
ngs-docs/2023-GGG298
Class materials for GGG 298, Tools for Data Intensive Research, WQ 2023 UC Davis.
3 2 01
ngs-docs/2022-GGG201b-lab
GGG 201(b), Intro to Bioinformatics - lab section. Winter 2022 at UC Davis.
Language:Jupyter Notebook2 3 02
ngs-docs/2024-GGG298
Class materials for GGG 298, Tools for Data Intensive Research, WQ 2024 @ UC Davis.
Language:R2
ngs-docs/2023-ggg298-sourmash-compare
A simple example snakemake workflow
Language:Jupyter Notebook1 1 224
ngs-docs/2023-rnaseq
1 1 0
ngs-docs/2024-ggg-201b-lab
1 1 0
ngs-docs/2024-ggg-201b-rnaseq
RNAseq stuff for 201b
Language:HTML1 1 0
ngs-docs/2024-ggg-201b-variant-calling
Language:Python1
ngs-docs/shared-conda-on-farm
Scripts and config for setting up a shared conda package space on farm.cse.ucdavis.edu
Language:Shell1 1 2
ngs-docs/2022-ggg-201b-hw1
Language:Python2 0
ngs-docs/2022-ggg-201b-hw2
Language:Python2 0
ngs-docs/2022-ggg-201b-variant-calling
Language:Python2 0
ngs-docs/2022-rnaseq-cloud
Language:HTML2 0
ngs-docs/2023-ggg-201b-lab
1 0
ngs-docs/2023-ggg-201b-lab-hw1
Language:Python1 0
ngs-docs/2023-ggg-201b-lab-hw2
Language:Python1 0
ngs-docs/2023-ggg-201b-variant-calling
Language:Python1 0
ngs-docs/2023-ggg-298-week6
Examples and foo for week 6 - small exercises, faded examples, etc.
1 0
ngs-docs/2023-ggg201b-assembly
Language:Python1 0
ngs-docs/2024-ggg-201b-assembly
Language:Python
ngs-docs/2024-ggg-201b-hw0
ngs-docs/2024-ggg-201b-hw1
HW #1 - variant calling
Language:Python
ngs-docs/2024-ggg-201b-hw1-slvanburen
2024-ggg-201b-hw1-slvanburen created by GitHub Classroom
Language:Python
ngs-docs/2024-pig-paradigm-workshop
Language:Shell1