ngs-fzb

Pinned Repositories

binoSNP
:mag: :pill: Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains
Language:Perl1 3 41
HaemoSeq
A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.
Language:Shell5 3 01
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Language:Perl40 13 8722
NTMtools
This repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing" (Diricks et al. 2022). Questions? Ask mdiricks@fz-borstel.de
Language:Shell10
SARSCOV2seq
Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data
Language:Perl0 1 00
SMaltophilia_phylo
Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper
Language:R1 2 11

ngs-fzb's Repositories

ngs-fzb/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Language:Perl40 13 8722
ngs-fzb/HaemoSeq
A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.
Language:Shell5 3 01
ngs-fzb/binoSNP
:mag: :pill: Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains
Language:Perl1 3 41
ngs-fzb/NTMtools
This repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing" (Diricks et al. 2022). Questions? Ask mdiricks@fz-borstel.de
Language:Shell10
ngs-fzb/SMaltophilia_phylo
Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper
Language:R1 2 11
ngs-fzb/SARSCOV2seq
Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data
Language:Perl0 1 00