Pinned Repositories
ariba
Fork of ARIBA for submitting patches
Fastaq
Fork of Pyfastaq for patching
micgent
The main back-end component of NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox
micgent_db
Reference data needed by MICGENT package
ngs-mstb-conda
Recipes for the custom Conda packages in NGS-MSTB system
ngs-mstb-docker
Containerized deployment of NGS-MSTB
ngs-mstb-secrets
Example multi-target config for deploying ngs-mstb-docker
pilon
Fork of Pilon for making patches
toil
Fork of Toil workflow engine created for making patches
NGS-MSTB - Next Generation Sequencing Microbial Surveillance Toolbox for scalable de-novo assembly of viral genomes and bacterial genes's Repositories
ngs-mstb/micgent
The main back-end component of NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox
ngs-mstb/ariba
Fork of ARIBA for submitting patches
ngs-mstb/Fastaq
Fork of Pyfastaq for patching
ngs-mstb/micgent_db
Reference data needed by MICGENT package
ngs-mstb/ngs-mstb-conda
Recipes for the custom Conda packages in NGS-MSTB system
ngs-mstb/ngs-mstb-docker
Containerized deployment of NGS-MSTB
ngs-mstb/ngs-mstb-secrets
Example multi-target config for deploying ngs-mstb-docker
ngs-mstb/pilon
Fork of Pilon for making patches
ngs-mstb/toil
Fork of Toil workflow engine created for making patches