Pinned Repositories
arlequin_xml
Scripts to extract and organize data from XML output from Arelequin
hydracompgen
pipeline and scripts for hydra comparative genomic analysis
NORBIS901_practical_report
Practical report for NORBIS901
repeatCraft
Interactive analysis of repeat elements
repeatcraftp
meta-pipeline for repetitive element de-fragmentation and annotation
te_synteny_viewer
Experimental Shiny app to explore TE density and synteny in two species
webR_demo
Demo of several webR usages
niccw's Repositories
niccw/repeatcraftp
meta-pipeline for repetitive element de-fragmentation and annotation
niccw/hydracompgen
pipeline and scripts for hydra comparative genomic analysis
niccw/repeatCraft
Interactive analysis of repeat elements
niccw/webR_demo
Demo of several webR usages
niccw/arlequin_xml
Scripts to extract and organize data from XML output from Arelequin
niccw/NORBIS901_practical_report
Practical report for NORBIS901
niccw/te_synteny_viewer
Experimental Shiny app to explore TE density and synteny in two species
niccw/AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
niccw/binder_r_test
niccw/bioinfofunc
Class and function for bioinformatics analysis
niccw/cichlid_qtl_analysis
niccw/CRISPRcasIdentifier
Machine learning for accurate identification and classification of CRISPR-Cas systems
niccw/CRISPRidentify
niccw/CRISPRloci
niccw/geneditbio-amplicon
Nextflow pipeline for all amplicon sequencing
niccw/jupyter
niccw/mattermost-poll-lunch
Provides a slash command to create polls in Mattermost
niccw/meanci
niccw/metaerg
niccw/ont-assembly-polish
ONT assembly and Illumina polishing pipeline
niccw/ont_sv
Scripts and pipeline to analysis SV in hydra dissociation experiment
niccw/quarto_live_demo
niccw/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
niccw/subsamplessr
Subsampling SSR Data function
niccw/wdl-rsemBuildRef
niccw/webR_test2