nicholasjclark
Amplify Fellow at University of Queensland. Interested in multivariate statistics, time series and forecasting, with applications in community ecology
Brisbane, Queensland, Australia
Pinned Repositories
ASC_talk
A talk on timeseries analysis and forecasting with the {mvgam} R 📦 for the 2023 Australian Statistical Conference
EFI_seminar
A seminar on ecological forecasting with the {mvgam} R 📦 for the Ecological Forecasting Initiative
ESA_2024_timeseries
A workshop on ecological forecasting with the {mvgam} package for the Ecological Society of Australia 2024 Conference
MRFcov
Markov random fields with covariates
mvforecast
Tools to fit, interrogate and forecast multivariate statistical and machine learning timeseries models
mvgam
{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for multivariate modeling and forecasting
phylo_func_trends
Using phylogenetic and functional relationships to inform nonlinear trend estimates from long-term biodiversity data
physalia-forecasting-course
Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}
portal_VAR
R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamics of ecological predictability)
STRUCTURE.popgen
Population genetics using STRUCTURE assignment probabilities
nicholasjclark's Repositories
nicholasjclark/mvgam
{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for multivariate modeling and forecasting
nicholasjclark/physalia-forecasting-course
Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}
nicholasjclark/MRFcov
Markov random fields with covariates
nicholasjclark/portal_VAR
R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamics of ecological predictability)
nicholasjclark/phylo_func_trends
Using phylogenetic and functional relationships to inform nonlinear trend estimates from long-term biodiversity data
nicholasjclark/ASC_talk
A talk on timeseries analysis and forecasting with the {mvgam} R 📦 for the 2023 Australian Statistical Conference
nicholasjclark/ESA_2024_timeseries
A workshop on ecological forecasting with the {mvgam} package for the Ecological Society of Australia 2024 Conference
nicholasjclark/mvforecast
Tools to fit, interrogate and forecast multivariate statistical and machine learning timeseries models
nicholasjclark/EFI_seminar
A seminar on ecological forecasting with the {mvgam} R 📦 for the Ecological Forecasting Initiative
nicholasjclark/Mediterranean-Fishes-MRF
R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)
nicholasjclark/phylo_smoothing
nicholasjclark/BBS.occurrences
Effects of landcover on avian community ecology
nicholasjclark/CV
Nicholas J Clark curriculum vitae
nicholasjclark/brms-1
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
nicholasjclark/CDC-self-harm
nicholasjclark/EF_Activities
Hands-on activities associated with the Ecological Forecasting book and graduate class
nicholasjclark/Environmetrics
CRAN Task View: Analysis of Ecological and Environmental Data
nicholasjclark/galamm
An R package for estimating generalized additive mixed models with latent variables
nicholasjclark/GAMbler
The GAMbler blog
nicholasjclark/LandcoverMODIS
Functions for downloading and processing MODIS Land_Cover_Type_1 data
nicholasjclark/malaviR
An R interface to MalAvi
nicholasjclark/marginaleffects
R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 80 classes of statistical models. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
nicholasjclark/nicholasjclark
nicholasjclark/nmixture_mvgam
Dynamic GAM N-mixture simulations
nicholasjclark/pfilter_mvgam
Particle filtering code from original mvgam submission; not currently supported
nicholasjclark/QUT_seminar
A seminar on ecological forecasting with the {mvgam} R 📦
nicholasjclark/rweekly.org
R Weekly
nicholasjclark/spatialepi_website
Github repository for our research group's website
nicholasjclark/TickBenchmarkEns
nicholasjclark/website
Hugo source code for the QERC website