nicholasjclark
Amplify Fellow at University of Queensland. Interested in multivariate statistics, time series and forecasting, with applications in community ecology
Brisbane, Queensland, Australia
Pinned Repositories
ASC_talk
A talk on timeseries analysis and forecasting with the {mvgam} R 📦 for the 2023 Australian Statistical Conference
EFI_seminar
A seminar on ecological forecasting with the {mvgam} R 📦 for the Ecological Forecasting Initiative
Mediterranean-Fishes-MRF
R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)
MRFcov
Markov random fields with covariates
mvforecast
Tools to fit, interrogate and forecast multivariate statistical and machine learning timeseries models
mvgam
{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for time series analysis and forecasting
phylo_func_trends
Using phylogenetic and functional relationships to inform nonlinear trend estimates from long-term biodiversity data
physalia-forecasting-course
Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}
portal_VAR
R code to replicate analyses in Clark et al in review (Forecasting rodent population dynamics with dynamic Generalized Additive Models)
STRUCTURE.popgen
Population genetics using STRUCTURE assignment probabilities
nicholasjclark's Repositories
nicholasjclark/mvgam
{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for time series analysis and forecasting
nicholasjclark/physalia-forecasting-course
Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}
nicholasjclark/MRFcov
Markov random fields with covariates
nicholasjclark/portal_VAR
R code to replicate analyses in Clark et al in review (Forecasting rodent population dynamics with dynamic Generalized Additive Models)
nicholasjclark/phylo_func_trends
Using phylogenetic and functional relationships to inform nonlinear trend estimates from long-term biodiversity data
nicholasjclark/ASC_talk
A talk on timeseries analysis and forecasting with the {mvgam} R 📦 for the 2023 Australian Statistical Conference
nicholasjclark/mvforecast
Tools to fit, interrogate and forecast multivariate statistical and machine learning timeseries models
nicholasjclark/EFI_seminar
A seminar on ecological forecasting with the {mvgam} R 📦 for the Ecological Forecasting Initiative
nicholasjclark/Mediterranean-Fishes-MRF
R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)
nicholasjclark/phylo_smoothing
nicholasjclark/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
nicholasjclark/BBS.occurrences
Effects of landcover on avian community ecology
nicholasjclark/CV
Nicholas J Clark curriculum vitae
nicholasjclark/CDC-self-harm
nicholasjclark/EF_Activities
Hands-on activities associated with the Ecological Forecasting book and graduate class
nicholasjclark/GAMbler
The GAMbler blog
nicholasjclark/LandcoverMODIS
Functions for downloading and processing MODIS Land_Cover_Type_1 data
nicholasjclark/malaviR
An R interface to MalAvi
nicholasjclark/marginaleffects
R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 80 classes of statistical models. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
nicholasjclark/nicholasjclark
nicholasjclark/nmixture_mvgam
Dynamic GAM N-mixture simulations
nicholasjclark/pfilter_mvgam
Particle filtering code from original mvgam submission; not currently supported
nicholasjclark/QUT_seminar
A seminar on ecological forecasting with the {mvgam} R 📦
nicholasjclark/rethinking
Statistical Rethinking course and book package
nicholasjclark/rweekly.org
R Weekly
nicholasjclark/spatialepi_website
Github repository for our research group's website
nicholasjclark/TickBenchmarkEns
nicholasjclark/twitter-blogdown
Fetching Twitter messages daily and turn them into a website based on blogdown
nicholasjclark/TwitterParasites
Track public mentions of ectoparasites
nicholasjclark/website
Hugo source code for the QERC website