Pinned Repositories
ansible-role-miniconda
Ansilbe role to install the anaconda python distribution
fma
Toy FMA repo for example queries.
metasearch
nidm
Neuroimaging Data Model: a library for neuroimaging data sharing
niquery
Neuroimaging Query Platform
ProvenanceLibrary
pyAIM
Annotation Image Markup Python Library
pyAnnotator
Python interface to the NCBO Annotator tool
redcap_rdf
A utility for converting REDCap data and data dictionaries into RDF Data Cubes with semantic annotations
nicholsn's Repositories
nicholsn/fma
Toy FMA repo for example queries.
nicholsn/guanaco
Answering questions with knowledge graphs using large language models.
nicholsn/awesome-semantic-web
A curated list of various semantic web and linked data resources.
nicholsn/biolink-api
API for linked biological knowledge
nicholsn/biolink-model
Schema and generated objects for biolink data model and upper ontology
nicholsn/centrosome
An open source image processing library
nicholsn/ckanapi
A command line interface and Python module for accessing the CKAN Action API
nicholsn/ckanr
R client for the CKAN API
nicholsn/dagster
An orchestration platform for the development, production, and observation of data assets.
nicholsn/datalad
Keep code, data, containers under control with git and git-annex
nicholsn/datalad-container
DataLad extension for containerized environments
nicholsn/dcat-linkml
nicholsn/dipper
Data Ingestion Pipeline for Monarch
nicholsn/fission
Fast and Simple Serverless Functions for Kubernetes
nicholsn/gosling-website
Documentation website of Gosling.js
nicholsn/linkml
Linked Open Data Modeling Language
nicholsn/linkml-model
Link Modeling Language (LinkML) model
nicholsn/linkml-project-cookiecutter
A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.
nicholsn/linkml.github.io
Website/splash page for main LinkML project
nicholsn/mkdocs-material
Technical documentation that just works
nicholsn/nicholsn.github.io
Nolan Nichols Homepage
nicholsn/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
nicholsn/pelican-themes
Themes for pelican
nicholsn/phenopacket-schema
Repository for the GA4GH inlined phenopacket schema
nicholsn/purl.obolibrary.org
A system for managing OBO PURLs
nicholsn/pySHACL
A Python validator for SHACL
nicholsn/redash
Make Your Company Data Driven. Connect to any data source, easily visualize, dashboard and share your data.
nicholsn/Science-knowledge-graph-ontologies
The Science knowledge graph ontologies, a.k.a. SKGO, is a suite of OWL ontology models to capture the knowledge of scientific research data, via publications, by interlinking domain-specific information, and allow access of these data in a machine-readable, transparent and comparable manner.
nicholsn/viewer
Viewers based on Slicer 4 envrionment
nicholsn/website-1
🌍 Source for the Comunica website