Pinned Repositories
benchtop-sequencing-comparison
ebov
Ebola virus surveillance
entrezajax
EntrezAJAX - Direct Web Browser Access to the Entrez Programming Utilities
massive-nanopore-silliness
Very very long reads, indeed
misc-genomics-tools
assorted scripts for doing genomics
nanopore
Software for nanopore data analysis
nanopore-basecalling-scripts
Some simple scripts to ease management and local basecalling of millions of FAST5 files
omicsmaps
Omicsmaps code and data
poredb
xbase
XBASE - a database and web framework for bacterial genomics and next-generation sequencing
nickloman's Repositories
nickloman/nanopore
Software for nanopore data analysis
nickloman/nanopore-basecalling-scripts
Some simple scripts to ease management and local basecalling of millions of FAST5 files
nickloman/poredb
nickloman/ebov
Ebola virus surveillance
nickloman/massive-nanopore-silliness
Very very long reads, indeed
nickloman/misc-genomics-tools
assorted scripts for doing genomics
nickloman/omicsmaps
Omicsmaps code and data
nickloman/nanopore-scripts
Various scripts and recipes for working with nanopore data
nickloman/nickloman.github.com
Online notebook
nickloman/diagnostic-metagenomics
nickloman/nanopolish
Signal-level algorithms for MinION data
nickloman/ont_fast5_api
Oxford Nanopore Technologies fast5 API software
nickloman/variant_definitions
nickloman/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
nickloman/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
nickloman/arcade-of-memories
Notes on setting up a definitive nostalgic arcade machine
nickloman/biocloudcentral
Easily launch CloudMan and CloudBioLinux clusters with no manual configuration
nickloman/biorhino-tools
A collection of simple bioinformatic scripts
nickloman/clinicogenomics
home page
nickloman/CONCOCT
Clustering cONtigs with COverage and ComposiTion
nickloman/cv
My YAML cv and resume.
nickloman/ete
ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
nickloman/genomescience
Lightweight Jekyll Theme
nickloman/longreadassembly
A place for a simple long read assembly and polishing pipeline
nickloman/pneumococcus-6C-study
Reference repository for PLoS ONE paper
nickloman/RDML
RDML data import for R
nickloman/snippy
:scissors: :zap: Rapid bacterial SNP calling and core genome alignments
nickloman/treetime
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
nickloman/ultrareads
Raw data repo for ultraread experiments on Oxford Nanopore MinION/GridION
nickloman/zika-isnv
Zika iSNV detection on nanopore