nickmachnik
PhD student in statistical genomics at the Institute of Science and Technology Austria.
IST AustriaVienna
Pinned Repositories
AoC-2021-Rust
My advent of code solutions for 2021
AoC-solutions
Solutions for Advent of Code puzzles.
codon-degeneracy
Routines for the extraction of degenerate sites and calculation of numbers of neutral substitutions from sequences and alignments.
CoffeeBuddyBot
An email bot that sends notifications to members of a social group about their coffee buddy of the week.
expected-levenshtein
Empirically determined approximate values for levenshtein distances between random strings.
fastatools
Command line tools for indexing, parsing and manipulating FASTA files.
google-kickstart
Solutions for Google Kick Start problems
keep-in-touch
A command line organizer that helps you remember to call your friends.
chess
Comparison of Hi-C Experiments using Structural Similarity.
nickmachnik's Repositories
nickmachnik/codon-degeneracy
Routines for the extraction of degenerate sites and calculation of numbers of neutral substitutions from sequences and alignments.
nickmachnik/fastatools
Command line tools for indexing, parsing and manipulating FASTA files.
nickmachnik/google-kickstart
Solutions for Google Kick Start problems
nickmachnik/AoC-2021-Rust
My advent of code solutions for 2021
nickmachnik/AoC-solutions
Solutions for Advent of Code puzzles.
nickmachnik/CoffeeBuddyBot
An email bot that sends notifications to members of a social group about their coffee buddy of the week.
nickmachnik/expected-levenshtein
Empirically determined approximate values for levenshtein distances between random strings.
nickmachnik/keep-in-touch
A command line organizer that helps you remember to call your friends.
nickmachnik/AoC2022
My AoC solutions for 2022
nickmachnik/aoc2023
nickmachnik/avablast
Small tool that makes the submission of all-vs-all BLAST jobs more convenient .
nickmachnik/bedvec
Testing ground for parallel processing of genotype data stored in PLINK .bed format
nickmachnik/benchmark-eigen-inverse
A small C++ program that measures time taken by Eigen's matrix inverse computation.
nickmachnik/cpp-hmc
Testing ground for a hamiltonian monte carlo implementation in c++.
nickmachnik/cuda-scan-tutorial
nickmachnik/fasta-rs
A rust lib for parsing and manipulating files in fasta format.
nickmachnik/github-stats
nickmachnik/hmc-first-steps
Implementations of the Hamiltonian Monte Carlo scheme for educational purposes
nickmachnik/hydra-docker
Dockerfile for creating image containing compiled Hydra
nickmachnik/nickmachnik
nickmachnik/numpy_jit_mgen_timings
nickmachnik/NUTS
python version of the No-U-Turn Sampler (NUTS) from Hoffman & Gelman, 2011
nickmachnik/pfam2go-sqlite
Pfam, Gene Ontology and UniProt mappings in SQLite
nickmachnik/py-gen-bed
Generate random genotype matrices in PLINK .bed format in python
nickmachnik/rs-hmc
Hamiltonian Monte Carlo and No-U-Turn Sampler implementations in Rust.
nickmachnik/sigmoidal-growth
A simple python library for finding the maximal slope in approximately sigmoidal growth curves.
nickmachnik/statgen-essentials-rs
An attempt to implement operations that are essential for statistical genomics in Rust.