Pinned Repositories
alsdb
ALS Data Browser
atav
A comprehensive platform for population-scale genomic analyses
atav-database
A relational database stores per sample based sequencing data.
atavdb
A web user interface that allows everyone access variant level data directly from the full data set in the ATAV database.
demo
Symfony Demo Application
docker-percona-myrocks-async-replication
Docker Percona MyRocks Quick Async Replication Test Setup
hetionet
Hetionet: an integrative network of disease
human-gene
text-to-cypher
A lightweight AI agent-based framework that converts natural language queries into Cypher scripts for Neo4j, leveraging LLMs for precise query generation.
trap
Transcript inferred Pathogenicity score data browser
nickzren's Repositories
nickzren/atav
A comprehensive platform for population-scale genomic analyses
nickzren/atav-database
A relational database stores per sample based sequencing data.
nickzren/atavdb
A web user interface that allows everyone access variant level data directly from the full data set in the ATAV database.
nickzren/hetionet
Hetionet: an integrative network of disease
nickzren/docker-percona-myrocks-async-replication
Docker Percona MyRocks Quick Async Replication Test Setup
nickzren/alsdb
ALS Data Browser
nickzren/demo
Symfony Demo Application
nickzren/genic
RVIS (Residual Variation Intolerance Score) Data Browser
nickzren/hail
Scalable genomic data analysis.
nickzren/hail-on-AWS-spot-instances
An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed
nickzren/human-gene
nickzren/Ninjitsu
Platformer + 2D Fighter + RPG
nickzren/PopSeQL
Scalable Analysis Framework of Genotypes & Annotations
nickzren/PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
nickzren/text-to-cypher
A lightweight AI agent-based framework that converts natural language queries into Cypher scripts for Neo4j, leveraging LLMs for precise query generation.
nickzren/trap
Transcript inferred Pathogenicity score data browser
nickzren/human-gene-anatomy
nickzren/human-gene-ontology
Human Gene Ontology annotations
nickzren/human-gene-pathway
A compilation of pathway gene sets
nickzren/igmdx
The IGMDx data browser provides an easy to use interface to access all such diagnoses in disease causing genes.
nickzren/myvariant.info
MyVariant.info: A BioThings API for human variant annotations
nickzren/seqr
web-based analysis tool for rare disease genomics
nickzren/sftp-toolkit
nickzren/tic-tac-toe
nickzren/vcf-parser
A strict streaming parser for VCF 4.1/4.2.