nicolasboisseau

nicolasboisseau's Stars

• dlvhdr/gh-dash

  A beautiful CLI dashboard for GitHub 🚀

  Language:Go7.4k220

• pagnani/ArDCA.jl

  Autoregressive networks for protein

  Language:Jupyter Notebook369

• AI4PDLab/DPO_pLM

  Language:Python282

• fhalab/SSMuLA

  Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"

  Language:Jupyter Notebook51

• KULL-Centre/_2024_cagiada_stability

  Language:Jupyter Notebook576

• Ced3-han/PepFlowww

  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)

  Language:Jupyter Notebook5510

• idmjky/EvolvePro

  PLM based active learning model for protein engineering

  Language:Python7012

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.5k188

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python54377

• gzBiomedical/EpiScan

  Antibody-Specific Epitope Mapping

  Language:Python102

• jwohlwend/boltz

  Official repository for the Boltz-1 biomolecular interaction model

  Language:Python1.5k168

• AstraZeneca/DiffAbXL

  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".

  Language:Python596

• kevinmicha/ANTIPASTI

  ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.

  Language:Jupyter Notebook224

• prescient-design/cortex

  A Modular Architecture for Deep Learning Systems

  Language:Python383

• prescient-design/lobster

  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation

  Language:Python598

• VectorSpaceLab/OmniGen

  OmniGen: Unified Image Generation. https://arxiv.org/pdf/2409.11340

  Language:Jupyter Notebook3.3k260

• adaptyvbio/ProtFill

  Inpainting protein sequence and structure

  Language:Python121

• Exscientia/abodybuilder3

  Language:Python4011

• varun-shanker/structural-evolution

  Language:Python8818

• bouralab/DeepUrfold

  Explore protein fold space with deep generative models

  Language:Jupyter Notebook122

• TattaBio/gLM2

  Language:Python555

• remvze/nothing

  🕳 Simply do nothing.

  Language:TypeScript21717

• castlechild/GRNSimulation

  Language:Jupyter Notebook31

• oxpig/AntiFold

  Improved antibody structure-based design using inverse folding

  Language:Python8111

• lightdock/lightdock

  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

  Language:Python31242

• haddocking/haddock3

  Official repo of the modular BioExcel version of HADDOCK

  Language:Python11940

• zrqiao/NeuralPLexer

  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

  Language:Jupyter Notebook27572

• jertubiana/ScanNet

  Language:Python11829

• microsoft/foldingdiff

  Diffusion models of protein structure; trigonometry and attention are all you need!

  Language:Jupyter Notebook52559

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.9k361