Pinned Repositories
AcqEngJ
Java-based acquisition engine for Micro-manager
colony_blob_bleacher
Python project to automatically select colonies and bleach blobs within using Pycro-Manager
diSPIMFusionUI
ImageJ2 UI for diSPIM fusion code
micro-manager
Microscope control and image acquisition integrated with ImageJ.
MMClearVolumePlugin
Micro-Manager 2.0 plugin that opens datasets in the ClearVolume 3D viewer
mnfinder
spotCounter
ImageJ plugin to count spots
spotIntensityAnalysis
ImageJ/Fiji plugin for analysis of intensity of spots (representing single molecules).
TriggerScopeMM
Micro-Manager-specific firmware for the TriggerScope
uScopeControl
A hub to start the next generation of Microscope Control Software
nicost's Repositories
nicost/uScopeControl
A hub to start the next generation of Microscope Control Software
nicost/micro-manager
Microscope control and image acquisition integrated with ImageJ.
nicost/colony_blob_bleacher
Python project to automatically select colonies and bleach blobs within using Pycro-Manager
nicost/MMClearVolumePlugin
Micro-Manager 2.0 plugin that opens datasets in the ClearVolume 3D viewer
nicost/mnfinder
nicost/TriggerScopeMM
Micro-Manager-specific firmware for the TriggerScope
nicost/AcqEngJ
Java-based acquisition engine for Micro-manager
nicost/cl-kernel-bindings
Minimal set of code to make use of the clij opencl kernels without imagej dependencies
nicost/ClearCL
Multi-backend Java Object Oriented Facade API for OpenCL.
nicost/ClearVolume
ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. With ClearVolume you can see live on your screen the stacks acquired by your microscope instead of waiting for offline post-processing to give you an intuitive and comprehensive view on your data.
nicost/clij-opencl-kernels
nicost/futureMMCore
Place to discuss the future design of a universal microscope hardware interface
nicost/I2K-MM
nicost/imagej-omero
Server- and client-side communication between ImageJ and OMERO
nicost/imagej.github.io
GitHub Pages for ImageJ
nicost/LightSheetManager
nicost/micro-manager.github.io
Micro-Manager website source
nicost/minimal-mistakes
A responsive Jekyll theme with clean typography and support for large full page images.
nicost/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
nicost/NDTiffStorage
N-dimensional, multiresolution file format for Micro-Manager
nicost/NDViewer
N-D multichannel multiresolution image viewer for Micro-Manager
nicost/omero-test-infra
Test infrastructure for decoupled repositories
nicost/phplabware
Web-based configurable database.
nicost/pycro-manager
Python control of micro-manager for smart microscopy
nicost/recOrder
reconstruction and visualization of phase and polarization
nicost/reveal.js
The HTML Presentation Framework
nicost/SnoutScopeNS
nicost/spotIntensityInAllChannels
ImageJ/Fiji plugin to find intensities of spots identified in one channel in all other channels
nicost/Stephan-Nico-Playground
nicost/upm-swing
Java SWING version of Universal Password Manager.