Pinned Repositories
cnv_freeze1
PTSD CNV Freeze 1 code database
global_ancestry
Global ancestry pipeline
heritability
Heritability pipeline
PTSD_GWAS_2016
Pipeline for meta-analysis of GWAS data
PTSD_MR
Mendelian Randomization analysis of PTSD and IMDs
Tinnitus
Tinnitus meta-analysis code
tractor_haul
Implementation of Tractor local ancestry pipeline not relying on HAIL
nievergeltlab's Repositories
nievergeltlab/global_ancestry
Global ancestry pipeline
nievergeltlab/Tinnitus
Tinnitus meta-analysis code
nievergeltlab/PTSD_GWAS_2016
Pipeline for meta-analysis of GWAS data
nievergeltlab/tractor_haul
Implementation of Tractor local ancestry pipeline not relying on HAIL
nievergeltlab/cnv_freeze1
PTSD CNV Freeze 1 code database
nievergeltlab/heritability
Heritability pipeline
nievergeltlab/PTSD_MR
Mendelian Randomization analysis of PTSD and IMDs
nievergeltlab/ewas
ewas code
nievergeltlab/freeze2.5
Freeze 2.5 PTSD GWAS
nievergeltlab/freeze3_gwas
Code base for freeze 3 GWAS
nievergeltlab/local_ancestry_elai
Local ancestry pipeline (Using ELAI)
nievergeltlab/methylation_scripts
All methylation file handling/processing scripts I ever made
nievergeltlab/ancestry_simulations
Local ancestry model power simulations
nievergeltlab/cnv_pipeline
CNV calling pipeline
nievergeltlab/ct_gwas
Childhood trauma GWAS code (From Dalvie et al.)
nievergeltlab/gemma_brain
GEMMA pipeline for quickly running multiple phentoypes (PGC PTSD ENIGMA)
nievergeltlab/gemma_pipeline
Pipeline for GEMMA analysis
nievergeltlab/gnomix_tractor_haul
Implementation of Tractor local ancestry pipeline not relying on HAIL and using gnomix
nievergeltlab/GWAS-negative-binomial-models
nievergeltlab/ipncomet
run ipattern on comet
nievergeltlab/ldak_pipeline
Join multiple datasets together for LDAK analysis
nievergeltlab/lhcMR
lhcMR
nievergeltlab/local_ancestry_simulations
Simulations for the power changes using per pop coefficients based on local ancestry
nievergeltlab/medflex
Flexible mediation analysis using natural effect models in R
nievergeltlab/PolygenicPTSD
Package for PGC-PTSD working group analysis pipeline to examine interaction between polygenic risk score and PTSD in predicting hypertension outcomes
nievergeltlab/ptsd_cnv
Scripts for PTSD CNV analyses
nievergeltlab/PTSDF3
PTSD Freeze 3
nievergeltlab/quasipoisson
quasi-poisson modeling for miclassified outcomes
nievergeltlab/ricopili
Nievergelt Lab hacked version of Ricopili (Ricopili-MANC)
nievergeltlab/survival_analysis_gwas
Methods to do survival analysis GWAS (from R)