Pinned Repositories
adv-r
Advanced R: a book
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
BioinfoSummerSchoolAngers2018
Jupyter notebook for the Environmental Genomics session at the Angers Bioinfo Summer School 2018
carveme
CarveMe: genome-scale metabolic model reconstruction
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
conky
Light-weight system monitor for X.
ipython_extensions
My IPython extensions
SFBIStats
Data and charts related to the recent french bioinformatics job market.
nigiord's Repositories
nigiord/SFBIStats
Data and charts related to the recent french bioinformatics job market.
nigiord/ipython_extensions
My IPython extensions
nigiord/adv-r
Advanced R: a book
nigiord/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
nigiord/BioinfoSummerSchoolAngers2018
Jupyter notebook for the Environmental Genomics session at the Angers Bioinfo Summer School 2018
nigiord/carveme
CarveMe: genome-scale metabolic model reconstruction
nigiord/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
nigiord/conky
Light-weight system monitor for X.
nigiord/cv
Personal Curriculum Vitae
nigiord/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
nigiord/micom
Python package to study microbial communities using metabolic modeling.
nigiord/MicrobeCensus
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
nigiord/mountyzilla
MountyZilla, une extension Firefox pour le jeu MountyHall
nigiord/pandoc_resume
The Markdown Resume
nigiord/pelican-themes
Themes for pelican
nigiord/Practical_Exercices_ENS_Cobrapy
The tex and requirement files for a TP on Flux Balance Analysis using Cobrapy given at the École Normale Supérieure (Imalis graduate program) on October, 21th 2014.
nigiord/presto
Presto performs a fast Wilcoxon rank sum test and auROC analysis. Latest benchmark ran 1 million observations, 1K features, and 10 groups in 16 seconds (sparse input) and 85 seconds (dense input).
nigiord/Prodigal
Prodigal Gene Prediction Software
nigiord/ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
nigiord/Reserve_parlementaire
Quick analysis of the allocation of the French "réserve parlementaire" in 2015
nigiord/SALib
Sensitivity Analysis Library in Python (Numpy). Contains Sobol, Morris, Fractional Factorial and FAST methods.
nigiord/seurat
R toolkit for single cell genomics
nigiord/seurat-object
nigiord/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
nigiord/snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
nigiord/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
nigiord/thesis_manuscript_microbial_growth_control_changing_environment
This is the sources of my PhD thesis titled: "Microbial growth control in changing environments"
nigiord/tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
nigiord/webpage-giordano
Source files used to generate my personal website using Pelican
nigiord/wellFARE
Python package for fluorescent reporter data analysis