nikcunniffe

Citrus-Greasy-Spot

Reference implementation of model in Laranjeira et al.

Coinfection

Code for using the NiSP and NiDP models to test for interactions between pathogens from cross-sectional data

hello-world

A test

Identifiability

MetacommunityDynamics

Supporting code for Metacommunity dynamics and the spurious detection of species associations in co-occurrence analyses

rZeroORing

Code for paper by van den Bosch, Helps and Cunniffe on using the O-ring statistic to calculate R0 for spatially structured epidemic models

SpatialSampling

Code to support Mastin et al. (2019) Optimising risk-based surveillance for early detection of invasive plant pathogens. https://doi.org/10.1101/834705

nikcunniffe/MetacommunityDynamics

Supporting code for Metacommunity dynamics and the spurious detection of species associations in co-occurrence analyses

nikcunniffe/rZeroORing

Code for paper by van den Bosch, Helps and Cunniffe on using the O-ring statistic to calculate R0 for spatially structured epidemic models

nikcunniffe/SpatialSampling

Code to support Mastin et al. (2019) Optimising risk-based surveillance for early detection of invasive plant pathogens. https://doi.org/10.1101/834705

nikcunniffe/Citrus-Greasy-Spot

Reference implementation of model in Laranjeira et al.

nikcunniffe/Coinfection

Code for using the NiSP and NiDP models to test for interactions between pathogens from cross-sectional data

nikcunniffe/hello-world

A test

nikcunniffe/Identifiability