Pinned Repositories
ChronQC
Manuscript describing ChronQC is now available online in Bioinformatics
nilesh-tawari's Repositories
nilesh-tawari/ChronQC
Manuscript describing ChronQC is now available online in Bioinformatics
nilesh-tawari/advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
nilesh-tawari/bacass
Simple bacterial assembly and annotation pipeline
nilesh-tawari/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
nilesh-tawari/blast-pipeline
Nextflow based blast pipeline
nilesh-tawari/clinvar
This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.
nilesh-tawari/docx-gen
Generates Word Documents From Templates
nilesh-tawari/nilesh-tawari.github.io
live example for ChronQC
nilesh-tawari/ProphET
nilesh-tawari/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
nilesh-tawari/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
nilesh-tawari/shiny_module
Learning about Shiny Modules
nilesh-tawari/smartpv_dist
Distribution of exe files for smartpv
nilesh-tawari/vipr
Assembly and intrahost / low-frequency variant calling for viral samples