National Institute of Mental Health Data Science & Sharing Team
Supporting investigators within the NIMH intramural research program in creating, distributing, and leveraging large, open datasets to accelerate discovery.
United States of America
Pinned Repositories
dataSci_job_ad_2024
dataset-phenotypes
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
dsst-defacing-pipeline
Defacing algorithm to improve and evaluate accuracy for large datasets.
HPC_helpers
Irritability-ADHD-symptoms-and-inhibitory-control-in-the-ABCD-Study
Analysis code and meta-data for manuscript on irritability, ADHD symptoms, and inhibitory control in ABCD Study
ndx-photostim
holographic photostimulation extension to NWB standard
ohbm2024tables
Holds a nice PDF version of HCP and PNC tables used in this OHBM 2024 abstract's analysis.
OpenCogData
Collection of publicly available cognitive task datasets
rcps-modified-petprep
A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
sharestats-leo-bsc
National Institute of Mental Health Data Science & Sharing Team's Repositories
nimh-dsst/dataset-phenotypes
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
nimh-dsst/OpenCogData
Collection of publicly available cognitive task datasets
nimh-dsst/dsst-defacing-pipeline
Defacing algorithm to improve and evaluate accuracy for large datasets.
nimh-dsst/HPC_helpers
nimh-dsst/ndx-photostim
holographic photostimulation extension to NWB standard
nimh-dsst/dataSci_job_ad_2024
nimh-dsst/abcd-fasttrack2bids
nimh-dsst/ctdb2bids
An automated tool to go from a CTDB form legend and data download to BIDS phenotype TSV and JSON files.
nimh-dsst/data_sharing_reuse
nimh-dsst/dataSci_job_ad
Open Data Scientist Job Ad
nimh-dsst/dataset-browser
A web app for searching metadata of neuroimaging studies and NIMH IRP studies.
nimh-dsst/dsst-poster
nimh-dsst/DTI-Phenotyping
Scripts used to curate and analyze the DTI-Phenotyping dataset.
nimh-dsst/fmriprep_helpers
nimh-dsst/Irritability-ADHD-symptoms-and-inhibitory-control-in-the-ABCD-Study
Analysis code and meta-data for manuscript on irritability, ADHD symptoms, and inhibitory control in ABCD Study
nimh-dsst/metasearch
OpenNeuroLab MetaSearch App
nimh-dsst/nda-study-1887
Scripts and data files used to convert anatomical MRI dicom data of the Autism Subtypes study to BIDS format, and to upload the dataset to NIMH Data Archive
nimh-dsst/neurodocker-tester
A quick and dirty test ground for GitHub Actions/Workflows, the GitHub Packages service, and publishing a basic Neurodocker image.
nimh-dsst/ohbm2024tables
Holds a nice PDF version of HCP and PNC tables used in this OHBM 2024 abstract's analysis.
nimh-dsst/ohbm_2020_poster
code and data for the poster Identifying Data Sharing and Data Reuse in Full-text NIMH-funded papers
nimh-dsst/rcps-modified-petprep
A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
nimh-dsst/sharestats-leo-bsc
nimh-dsst/bids-validator-comparator
A small set of scripts to BIDS-validate and compare validator version outputs for OpenNeuro datasets.
nimh-dsst/dsst-rtd
DSST's readthedocs site repo.
nimh-dsst/nda-bids-upload
For uploading BIDS data to the NDA.
nimh-dsst/NIH_IRP_PubDB
An application to catalog and measure NIH IRP publications.
nimh-dsst/opendata_gpt
nimh-dsst/osm
OpenSciMetrics (OSM) applies NLP and LLM-based metrics and indicators related to transparency, data sharing, rigor, and open science on biomedical publications.
nimh-dsst/osm-rtrans-etl
Extract, Transform, and load data associated with the rtransparent publication into a MongoDB database
nimh-dsst/sharestats-leo-notfork
importing leo's code to get around LFS restriction on forks