Pinned Repositories
AliCUT
A nice tool to cut out ALISCORE identified randomized sequence sections in multiple sequence alignments.
angsd-wrapper
Utilities for analyzing next generation sequencing data.
angsd_pipeline
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
genomic-data-analysis
Pipelines for analyzing genomic or transcriptomic data
lcwgs-guide-tutorial
selection_analysis
selscan
Haplotype based scans for selection
nitinra's Repositories
nitinra/angsd_pipeline
nitinra/genomic-data-analysis
Pipelines for analyzing genomic or transcriptomic data
nitinra/lcwgs-guide-tutorial
nitinra/selection_analysis
nitinra/selscan
Haplotype based scans for selection
nitinra/AliCUT
A nice tool to cut out ALISCORE identified randomized sequence sections in multiple sequence alignments.
nitinra/angsd-wrapper
Utilities for analyzing next generation sequencing data.
nitinra/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
nitinra/cheatsheets
RStudio Cheat Sheets
nitinra/CNVcaller
nitinra/Comparative-Annotation-Toolkit
nitinra/Corvid_SVpopgen
nitinra/easySFS
Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
nitinra/eems
Estimating Effective Migration Surfaces
nitinra/FASconCAT-G
FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.
nitinra/genomics_general
General tools for genomic analyses.
nitinra/genotype_plot
A set of functions to visualise genotypes based on a VCF
nitinra/MAPS
software for the MAPS method
nitinra/ngsTools
Programs to analyse NGS data for population genetics purposes
nitinra/popgen-notes
Population genetics notes
nitinra/PopGenCode
Various bits of code for population genetic methods used in my publications
nitinra/population_genomics_pieris
Codes used for Pieris macdunnoughii population genetics manuscript
nitinra/psmcr
R Port of psmc
nitinra/Python-Class
nitinra/statements
Successful Job Applications and Grants
nitinra/SURVIVOR
Toolset for SV simulation, comparison and filtering
nitinra/workshop-popgenome
Tutorial about R package PopGenome
nitinra/YouTubeTutorials