Beifang Niu's Lab
Niu's Lab at Computer Network Information Center (CNIC) of the Chinese Academy of Sciences (CAS)
beijing, China
Pinned Repositories
DIVIS
integrated and customisable pipeline of cancer genome sequencing analysis
docker-flt3-itd
gclust
genome sized sequences clustering
hcp547
杂交捕获测序pannel数据分析流程
LarGo-annotator
Large Scale Genome Annotator
MetaGeneConsensus
msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
msisensor-ct
Microsatellite instability (MSI) detection for cfDNA samples.
msisensor2
Microsatellite instability (MSI) detection for tumor only data.
PTRBC
Beifang Niu's Lab's Repositories
niu-lab/msisensor2
Microsatellite instability (MSI) detection for tumor only data.
niu-lab/msisensor-ct
Microsatellite instability (MSI) detection for cfDNA samples.
niu-lab/gclust
genome sized sequences clustering
niu-lab/docker-flt3-itd
niu-lab/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
niu-lab/DIVIS
integrated and customisable pipeline of cancer genome sequencing analysis
niu-lab/MetaGeneConsensus
niu-lab/PTRBC
niu-lab/hcp547
杂交捕获测序pannel数据分析流程
niu-lab/joinx
a tool for processing .bed and .vcf files
niu-lab/LarGo-annotator
Large Scale Genome Annotator
niu-lab/VarDictCpp
This is a implementation of VarDictJava with C++.
niu-lab/bioconda-recipes
Conda recipes for the bioconda channel.
niu-lab/calcRoiCovg
niu-lab/fr-hit
niu-lab/GPyFlow-CLI
a light way to run workflow
niu-lab/GPyFlow-Visual
edit workflow on web browser
niu-lab/GPyFlow-Workflows
a workflow platform to share workflow
niu-lab/hotspot3d
3D hotspot mutation proximity analysis tool
niu-lab/LarGo
Large Scale Genome assembler
niu-lab/msisensor2-py
Microsatellite instability (MSI) detection tool of python version for tumor only data .
niu-lab/MuSiC2
identifying mutational significance in cancer genomes
niu-lab/Niu-Lab_Web-Portal
Creating initial version of our lab's web portal.
niu-lab/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.