We have downloaded two version software in November 2019 and 2020 respectively.However,the results of tumor only from these two versions were inconsistent.Is it normal?
biofer opened this issue · 0 comments
biofer commented
The first version: Software downloaded on November 12, 2019
Result
loading bed regions ...
loading homopolymer and microsatellite sites ...
Total loading windows: 61
Total loading homopolymer and microsatellites: 71
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*** Summary information ***
Number of total sites: 71
Number of sites with enough coverage: 68
Number of MSI sites: 1
MSI score(%): 1.47059
Total time consumed: 11 secs
The second version: Software downloaded on August 28, 2020
Result
loading bed regions ...
loading homopolymer and microsatellite sites ...
Total loading windows: 61
Total loading homopolymer and microsatellites: 71
......
......
......
*** Summary information ***
Number of total sites: 71
Number of sites with enough coverage: 0
Number of MSI sites: 0
MSI score(%): 0
Total time consumed: 3 secs
The results from these two versions were inconsistent. No site was covered from the second version. Is it normal?
additional information：
The pair sample Result
loading bed regions ...
loading homopolymer and microsatellite sites ...
Total loading windows: 285
Total loading homopolymer and microsatellites: 844
*** Summary information ***
Number of total sites: 844
Number of sites with enough coverage: 709
Number of MSI sites: 45
MSI score(%): 6.34697
Total time consumed: 188 secs