Pinned Repositories
bioinformatics_tips
General bioinformatics tips
HERV_scGCB
Single cell data from Germinal Center B cell paper
NCICCR
data from national cancer institute for cancer research
nixonlab.github.io
scopetools
Utility functions for working with Telescope and Stellarscope data
scTelescope
Quantify HERVs in single-cell sequencing data
snakemake_references
stellarscope
Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing
TCGA_SKCM_mets
The Repository to download, STAR_align, TELESCOPE and Process DE for Mets vs. Non-mets TCGA CM Bulk-RNAseq
TelescopeTools
What the Package Does (One Line, Title Case)
nixonlab's Repositories
nixonlab/bioinformatics_tips
General bioinformatics tips
nixonlab/stellarscope
Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing
nixonlab/scopetools
Utility functions for working with Telescope and Stellarscope data
nixonlab/scTelescope
Quantify HERVs in single-cell sequencing data
nixonlab/snakemake_references
nixonlab/DLBCL_HERV_atlas_GDC
nixonlab/documenting-scTELESCOPE
A place to keep articles, datasets, and notes related to the development of scTELESCOPE
nixonlab/dopkins_jan2022
nixonlab/HERV_scEBV
Single cell data from the EBV-transformed lymphoblastoid cell line paper
nixonlab/HERV_scGCB
Single cell data from Germinal Center B cell paper
nixonlab/HERV_scGTEX
Quantify HERVs in single nucleus RNA-seq GTEx datasets using single-cell Telescope (scTelescope)
nixonlab/HERV_TabulaSapiens
Quantify HERVs in Tabula Sapiens datasets using single-cell Telescope (scTelescope)
nixonlab/HERV_um_mets
HERV analysis in UM metastasis
nixonlab/Mets_CM_bulk
Bulk RNA seq analysis for responders v non-responders
nixonlab/NCICCR
data from national cancer institute for cancer research
nixonlab/nixonlab.github.io
nixonlab/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
nixonlab/snakemake_rule_library
A place to share generic "best practices" rules for the lab
nixonlab/stellarscope_bug_reproduce
nixonlab/TCGA_SKCM_mets
The Repository to download, STAR_align, TELESCOPE and Process DE for Mets vs. Non-mets TCGA CM Bulk-RNAseq
nixonlab/TelescopeTools
What the Package Does (One Line, Title Case)
nixonlab/bioconda-recipes
Conda recipes for the bioconda channel.
nixonlab/stellarscope_simulation
Simulations for testing Stellarscope
nixonlab/StellarscopeTools
nixonlab/te_riboseq_atlas
A transposable element atlas of ribo-seq data from multiple tissue types. (Project ID: PRJNA756018)
nixonlab/teabiscuit
Transposable Element Analysis in BraIn, Single Cell, and Ubiquitous Tissues
nixonlab/wcm_scu
Notes about working with WCM SCU Resources