Pinned Repositories
basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
fatools
A Python library for performing DNA fragment-analysis
gatk4-germline-cnvs
Workflows for germline copy number variant discovery with GATK4
gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scvi-tools
Deep generative models for single-cell omics data
tensorflow
Computation using data flow graphs for scalable machine learning
scanpy
Single-cell analysis in Python. Scales to >100M cells.
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
njbernstein's Repositories
njbernstein/basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
njbernstein/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
njbernstein/fatools
A Python library for performing DNA fragment-analysis
njbernstein/gatk4-germline-cnvs
Workflows for germline copy number variant discovery with GATK4
njbernstein/gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
njbernstein/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
njbernstein/scvi-tools
Deep generative models for single-cell omics data
njbernstein/tensorflow
Computation using data flow graphs for scalable machine learning