Pinned Repositories
algo-lib-nk
editdistancek
LMS algorithm for computing edit distance with SIMD optimizations
syncsignature
nkkarpov's Repositories
nkkarpov/editdistancek
LMS algorithm for computing edit distance with SIMD optimizations
nkkarpov/syncsignature
nkkarpov/algo-lib-nk
nkkarpov/batched-sorting
nkkarpov/collab-comm
nkkarpov/fbhc2017
nkkarpov/fp2015
homework functional programming
nkkarpov/herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
nkkarpov/KSummaries
Library of mergeable summaries
nkkarpov/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
nkkarpov/StreamingCC
A C++ library for summarizing data streams
nkkarpov/tree-similarity
Library for tree similarity algorithms and queries.
nkkarpov/whatshap
Read-based phasing of genomic variants, also called haplotype assembly