nkrumm

Pinned Repositories

CoNIFER
CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.
Language:Python810
conifer-tools
CoNIFER Tools - Tools for improving call generation, annotation and filtering. Used in conjuction with CoNIFER (Copy Number Inference From Exome Reads)
Language:Python3 4 34
s3proxy
S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.
Language:Python133
storagecosts
Estimate the cost of NGS cloud storage.
Language:Python30
umi-nextflow
Language:HTML00

nkrumm's Repositories

nkrumm/storagecosts
Estimate the cost of NGS cloud storage.
Language:Python30
nkrumm/umi-nextflow
Language:HTML00
nkrumm/azure-repos-vscode
Visual Studio Team Services Extension for VS Code
Language:TypeScript1 0
nkrumm/bwa-pipeline
Language:Nextflow
nkrumm/crux-pipeline
Language:Python
nkrumm/dada2-nf
A Nextflow pipeline for processing 16S rRNA sequences using dada2
Language:R1 0
nkrumm/demux-nf
A nextflow demux pipeline
Language:Nextflow1
nkrumm/dokku
A docker-powered PaaS that helps you build and manage the lifecycle of applications
Language:Shell
nkrumm/dokku-nginx-logging
Plugin for dokku that copies a nginx.conf.sigil to each app on post-extract.
Language:Shell
nkrumm/dokku-odoo
A Odoo image ready to be deployed on dokku mini-PaaS
Language:Shell
nkrumm/flask_uwnetid
Language:Python1 11
nkrumm/genie_pipeline
GENIE = GErmline VarIEnt Pipeline
Language:Nextflow2 2
nkrumm/genomic_costs
Language:Python
nkrumm/GTCtoVCF
Script to convert GTC/BPM files to VCF
Language:Python
nkrumm/hCoV19-nf
Language:Nextflow
nkrumm/hello
test nextflow script
Language:Nextflow2 0
nkrumm/hrd-pipeline
Language:Jupyter Notebook
nkrumm/igv-snapshots-nf
Language:Nextflow2 0
nkrumm/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
Language:JavaScript
nkrumm/knowledgesystems-k8s-deployment
Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes
Language:CSS0 0
nkrumm/logspout-s3
[NOT MAINTAINED] Logspout Adapter for AWS S3 to send docker logs to S3 - ready for Athena
Language:Go
nkrumm/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python
nkrumm/ncgl-nf
Language:Nextflow
nkrumm/nextflow
A DSL for data-driven computational pipelines
Language:Groovy
nkrumm/nextflow-conifer-plots
Language:Nextflow2 0
nkrumm/nextflow-runner
Language:Shell1
nkrumm/nextflow-s3fs
An S3 File System Provider for Java 7
Language:Java1 0
nkrumm/react-bootstrap-typeahead
React typeahead with Bootstrap styling
nkrumm/react-use
React Hooks — 👍
nkrumm/troposphere
troposphere - Python library to create AWS CloudFormation descriptions