Pinned Repositories
CoNIFER
CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.
conifer-tools
CoNIFER Tools - Tools for improving call generation, annotation and filtering. Used in conjuction with CoNIFER (Copy Number Inference From Exome Reads)
s3proxy
S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.
storagecosts
Estimate the cost of NGS cloud storage.
umi-nextflow
nkrumm's Repositories
nkrumm/storagecosts
Estimate the cost of NGS cloud storage.
nkrumm/umi-nextflow
nkrumm/azure-repos-vscode
Visual Studio Team Services Extension for VS Code
nkrumm/bwa-pipeline
nkrumm/crux-pipeline
nkrumm/dada2-nf
A Nextflow pipeline for processing 16S rRNA sequences using dada2
nkrumm/demux-nf
A nextflow demux pipeline
nkrumm/dokku
A docker-powered PaaS that helps you build and manage the lifecycle of applications
nkrumm/dokku-nginx-logging
Plugin for dokku that copies a nginx.conf.sigil to each app on post-extract.
nkrumm/dokku-odoo
A Odoo image ready to be deployed on dokku mini-PaaS
nkrumm/flask_uwnetid
nkrumm/genie_pipeline
GENIE = GErmline VarIEnt Pipeline
nkrumm/genomic_costs
nkrumm/GTCtoVCF
Script to convert GTC/BPM files to VCF
nkrumm/hCoV19-nf
nkrumm/hello
test nextflow script
nkrumm/hrd-pipeline
nkrumm/igv-snapshots-nf
nkrumm/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
nkrumm/knowledgesystems-k8s-deployment
Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes
nkrumm/logspout-s3
[NOT MAINTAINED] Logspout Adapter for AWS S3 to send docker logs to S3 - ready for Athena
nkrumm/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nkrumm/ncgl-nf
nkrumm/nextflow
A DSL for data-driven computational pipelines
nkrumm/nextflow-conifer-plots
nkrumm/nextflow-runner
nkrumm/nextflow-s3fs
An S3 File System Provider for Java 7
nkrumm/react-bootstrap-typeahead
React typeahead with Bootstrap styling
nkrumm/react-use
React Hooks — 👍
nkrumm/troposphere
troposphere - Python library to create AWS CloudFormation descriptions