Pinned Repositories
CM122_starter_code
Starter code for projects for CM122/CM222
isoQTL
Metalign
Metalign: efficient alignment-based metagenomic profiling via containment min hash
metalign_paper_replication
Scripts and files for replicating results in the metalign paper
metapheno
Repository for the T2D/obesity experiments run in the Metapheno paper
MiniScrub
De novo long read scrubbing with Minimap and Convolutional Neural Networks
MRTwin-replication
Scripts needed to replicate the MR-Twin analysis
MsCAVIAR
MsCAVIAR identifies causal variants using GWAS summary statistics from multiple studies, e.g. trans-ethnic fine mapping
multiInstanceLearning
Multiple Instance Learning research code and CAMIL paper, February - August 2016
PySensemakr
Python implementation of the original R sensemakr package: https://github.com/carloscinelli/sensemakr
nlapier2's Repositories
nlapier2/PySensemakr
Python implementation of the original R sensemakr package: https://github.com/carloscinelli/sensemakr
nlapier2/Metalign
Metalign: efficient alignment-based metagenomic profiling via containment min hash
nlapier2/metapheno
Repository for the T2D/obesity experiments run in the Metapheno paper
nlapier2/MsCAVIAR
MsCAVIAR identifies causal variants using GWAS summary statistics from multiple studies, e.g. trans-ethnic fine mapping
nlapier2/MRTwin-replication
Scripts needed to replicate the MR-Twin analysis
nlapier2/multiInstanceLearning
Multiple Instance Learning research code and CAMIL paper, February - August 2016
nlapier2/CM122_starter_code
Starter code for projects for CM122/CM222
nlapier2/MiniScrub
De novo long read scrubbing with Minimap and Convolutional Neural Networks
nlapier2/isoQTL
nlapier2/metalign_paper_replication
Scripts and files for replicating results in the metalign paper
nlapier2/mouseGWASAnalysisPackage
Package for LOCO GWAS analysis of mouse clinical traits via pylmm
nlapier2/MR-Twin
Software for the MR-Twin paper ("Leveraging family data to design Mendelian Randomization that is provably robust to population stratification")
nlapier2/mrsensemakr
nlapier2/nathanrlapierrecom
My personal website
nlapier2/nlapier2.github.io
My GitHub-hosted personal website
nlapier2/bioconda-recipes
Conda recipes for the bioconda channel.
nlapier2/CV
My Curriculum Vitae
nlapier2/miscResearchCode
Miscellaneous research code that is not being actively developed or does not warrant its own repository.
nlapier2/mr-sensemakr_replication
nlapier2/mscaviar_replication
nlapier2/mvmr_website
Website for the MVMR project
nlapier2/NanbendoSite
nanbendo site files
nlapier2/pennapps2015
nlapier2/pkg-manager-review
Manubot Repo for Package Manager Review Paper
nlapier2/pyro_pytorch_tutorials
Tutorials and example code for learning PyTorch and Pyro
nlapier2/tabulatercom
Browser extension for tab management
nlapier2/test_workflowr
nlapier2/TulExtension