nlapier2

Postdoctoral Fellow in the University of Chicago's Department of Human Genetics

Pinned Repositories

CM122_starter_code
Starter code for projects for CM122/CM222
Language:Python3 0 04
isoQTL
Language:Jupyter Notebook2 1 00
Metalign
Metalign: efficient alignment-based metagenomic profiling via containment min hash
Language:Python33 6 437
metalign_paper_replication
Scripts and files for replicating results in the metalign paper
Language:HTML2 1 12
metapheno
Repository for the T2D/obesity experiments run in the Metapheno paper
Language:Python14 2 02
MiniScrub
De novo long read scrubbing with Minimap and Convolutional Neural Networks
Language:Python3 3 00
MRTwin-replication
Scripts needed to replicate the MR-Twin analysis
Language:R4 1 01
MsCAVIAR
MsCAVIAR identifies causal variants using GWAS summary statistics from multiple studies, e.g. trans-ethnic fine mapping
Language:C++63
multiInstanceLearning
Multiple Instance Learning research code and CAMIL paper, February - August 2016
Language:TeX4 2 00
PySensemakr
Python implementation of the original R sensemakr package: https://github.com/carloscinelli/sensemakr
Language:Jupyter Notebook48 4 225

nlapier2's Repositories

nlapier2/PySensemakr
Python implementation of the original R sensemakr package: https://github.com/carloscinelli/sensemakr
Language:Jupyter Notebook48 4 225
nlapier2/Metalign
Metalign: efficient alignment-based metagenomic profiling via containment min hash
Language:Python33 6 437
nlapier2/metapheno
Repository for the T2D/obesity experiments run in the Metapheno paper
Language:Python14 2 02
nlapier2/MsCAVIAR
MsCAVIAR identifies causal variants using GWAS summary statistics from multiple studies, e.g. trans-ethnic fine mapping
Language:C++63
nlapier2/MRTwin-replication
Scripts needed to replicate the MR-Twin analysis
Language:R4 1 01
nlapier2/multiInstanceLearning
Multiple Instance Learning research code and CAMIL paper, February - August 2016
Language:TeX4 2 00
nlapier2/CM122_starter_code
Starter code for projects for CM122/CM222
Language:Python3 0 04
nlapier2/MiniScrub
De novo long read scrubbing with Minimap and Convolutional Neural Networks
Language:Python3 3 00
nlapier2/isoQTL
Language:Jupyter Notebook2 1 00
nlapier2/metalign_paper_replication
Scripts and files for replicating results in the metalign paper
Language:HTML2 1 12
nlapier2/mouseGWASAnalysisPackage
Package for LOCO GWAS analysis of mouse clinical traits via pylmm
Language:Python2 3 00
nlapier2/MR-Twin
Software for the MR-Twin paper ("Leveraging family data to design Mendelian Randomization that is provably robust to population stratification")
Language:Python20
nlapier2/mrsensemakr
Language:Python2 2 61
nlapier2/nathanrlapierrecom
My personal website
Language:CSS1 1 0
nlapier2/nlapier2.github.io
My GitHub-hosted personal website
Language:Ruby1 0 0
nlapier2/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell
nlapier2/CV
My Curriculum Vitae
Language:TeX0 0
nlapier2/miscResearchCode
Miscellaneous research code that is not being actively developed or does not warrant its own repository.
Language:Python1 0
nlapier2/mr-sensemakr_replication
Language:Jupyter Notebook2 0
nlapier2/mscaviar_replication
Language:Jupyter Notebook1 02
nlapier2/mvmr_website
Website for the MVMR project
Language:R1 0
nlapier2/NanbendoSite
nanbendo site files
Language:CSS2 0
nlapier2/pennapps2015
Language:HTML
nlapier2/pkg-manager-review
Manubot Repo for Package Manager Review Paper
Language:HTML0 0
nlapier2/pyro_pytorch_tutorials
Tutorials and example code for learning PyTorch and Pyro
Language:Jupyter Notebook
nlapier2/tabulatercom
Browser extension for tab management
nlapier2/test_workflowr
Language:R
nlapier2/TulExtension
Language:CSS1