nlp4bia-bsc

annotate_brat_dictionary_lookup_snomed

This repository contains a script to use a .tsv of SNOMED as dictionary lookup of these terms. There is an option of removal of certain 'semantic tags'. The input would be a folder with .txt files, and the output would be these .txt files and their corresponding brat annotations .anns files

compare_brat_annotations

This programme is designed to compare gold standard annotations in brat format with different predictions.

dt4h-coverage-dash

dt4h-modelannotation-spanish-api

dt4h-modelanotator-api

hugging-face-pipeline

Automation tools for different processes regarding the training and deployment of models and datasets to Hugging Face

KeyCARE

multicardioner_evaluation_library

Evaluation library for the MultiCardioNER shared task (https://temu.bsc.es/multicardioner/)

scielo_webscrape_all_journals_info

This repository contains a script to web scrape SciELO database in order to get a .csv file with information of: journal name, categories, active/inactive, URL

textmining_airflow_template

nlp4bia-bsc/KeyCARE

nlp4bia-bsc/hugging-face-pipeline

Automation tools for different processes regarding the training and deployment of models and datasets to Hugging Face

nlp4bia-bsc/multicardioner_evaluation_library

Evaluation library for the MultiCardioNER shared task (https://temu.bsc.es/multicardioner/)

nlp4bia-bsc/annotate_brat_dictionary_lookup_snomed

This repository contains a script to use a .tsv of SNOMED as dictionary lookup of these terms. There is an option of removal of certain 'semantic tags'. The input would be a folder with .txt files, and the output would be these .txt files and their corresponding brat annotations .anns files

nlp4bia-bsc/compare_brat_annotations

This programme is designed to compare gold standard annotations in brat format with different predictions.

nlp4bia-bsc/dt4h-coverage-dash

nlp4bia-bsc/dt4h-modelannotation-spanish-api

nlp4bia-bsc/dt4h-modelanotator-api

nlp4bia-bsc/scielo_webscrape_all_journals_info

This repository contains a script to web scrape SciELO database in order to get a .csv file with information of: journal name, categories, active/inactive, URL

nlp4bia-bsc/symptemist_evaluation_library

Evaluation library for the SympTEMIST shared task (https://temu.bsc.es/symptemist/)

nlp4bia-bsc/textmining_airflow_template

nlp4bia-bsc/corpus-cleaner-acl

nlp4bia-bsc/dt4h-cogstack-pipelines

nlp4bia-bsc/textmining-common-actions

nlp4bia-bsc/textmining-rocket-airflow

nlp4bia-bsc/textmining-rocket-templates

nlp4bia-bsc/textmining-snomed-translator-dag

nlp4bia-bsc/textmining_scielo_scrapping