An R script to find sequencing primers useful to the plasmid at hand
Nicholas McGlincy, 27th July 2013, Baltimore MD, USA
Requires R, and a version advanced enough to run the Biostrings package. I used Biostrings because of the convenient functions and classes, but loading it slows the script down to ~5 seconds
Usage from the terminal window:
Rscript primerMatching.R [plasmid file] [primer file]
Plasmid file must be in fasta format. Primer file is a .csv download of the group sequencing primer gsheet.