nmquijada/tormes

Issues

• Bootstrap value?

  #73 opened 6 months ago by carmennns2
  0

• Suggestion - Incorporate checkpointing

  #49 opened 3 years ago by Steven-Kemp
  4

• installing kraken2 database

  #72 opened 9 months ago by claramicro
  2

• tormes-setup ERROR minikraken2

  #70 opened a year ago by Rubenjues
  1

• Pipeline usage with scaffolds.fasta as input file

  #71 opened 10 months ago by Khabibullin543
  0

• Installation Issue macOS BigSur

  #42 opened 3 years ago by ftettamanti
  30

• every time the same error occurs that solving environment killed

  #67 opened a year ago by HK0911
  3

• Tormes skipping Kraken2 taxaonomic assignment for few files

  #68 opened a year ago by vsmicrogenomics
  3

• reference-guided genome assembly

  #69 opened a year ago by ariasamin
  6

• Pangenome analysis was not performed.

  #65 opened 2 years ago by ariasamin
  4

• "Warnings" in Pangenome tree (core genes) and error with dplyr and tibble

  #64 opened 2 years ago by Panchastico
  4

• error when "resuming" run

  #57 opened 2 years ago by shlomobl
  3

• ggTree installation error - part 2

  #50 opened 2 years ago by biobrad
  4

• Annotation Paused

  #61 opened 2 years ago by zgerbec
  4

• New R issue ('ape' package fail) - With solution

  #62 opened 2 years ago by biobrad
  4

• Eternal solving environment tormes-1.3.0.yml

  #60 opened 2 years ago by imonteroo
  5

• problems with report generation

  #63 opened 2 years ago by Khabibullin543
  4

• kraken2 does not generate any result due to wrong PATH to its database in config_file.txt

  #30 opened 4 years ago by nmquijada
  3

• Run stopped

  #59 opened 2 years ago by ddesai5
  2

• Re-run with subset of samples

  #54 opened 2 years ago by shlomobl
  2

• custom protein database

  #56 opened 2 years ago by shlomobl
  4

• tormes html report file could not be created

  #53 opened 2 years ago by ryobon-dev
  8

• Installation Error

  #58 opened 2 years ago by SrivastavaM
  3

• Virulence genes and plasmids

  #28 opened 3 years ago by pavlo888
  18

• Custom databases

  #55 opened 2 years ago by shlomobl
  1

• output directory

  #52 opened 2 years ago by plantman8
  2

• tormes-setup error

  #51 opened 2 years ago by jysi-lab
  5

• Conda glibc issue

  #48 opened 3 years ago by herrzhull
  9

• ggtree installation error

  #47 opened 3 years ago by stevin-wilson
  1

• Large difference in quality of the assembly using different filtering methods

  #46 opened 3 years ago by valery-shap
  3

• problem in "--isolate --gene-finding"

  #45 opened 3 years ago by ariasamin
  4

• tormes_setup should ignore/remove pre-existing tormes-setup-warnings.log

  #44 opened 3 years ago by mglubber
  1

• ggtree .html report issue

  #43 opened 3 years ago by geomili
  3

• --genera Escherichia giving error

  #40 opened 3 years ago by Vikash84
  3

• Looks error in renaming of ecoli_vf gene fedB (fedC protein) and fedC (fedD protein).

  #41 opened 3 years ago by Vikash84
  1

• ERROR Binaries

  #39 opened 3 years ago by Beta-INC
  3

• WARNING: html report file could not be created

  #35 opened 3 years ago by valery-shap
  3

• tormes_report.Rmd issue

  #38 opened 3 years ago by geomili
  9

• RDPTools not found

  #37 opened 3 years ago by SilvanoS
  18

• Spades memory issue in 1.2 but not 1.1

  #36 opened 4 years ago by dkarig
  6

• Nextseq reads

  #34 opened 4 years ago by valery-shap
  8

• Release files for 1.2.1 only contain files for 1.2.0

  #33 opened 4 years ago by FokkeDijkstra
  3

• FimH typing was not performed

  #31 opened 4 years ago by nmquijada
  1

• Report is not generated when samples don't resolve MLST

  #27 opened 4 years ago by nmquijada
  1

• Warning: Ignoring 26 observations

  #32 opened 4 years ago by alantsangmb
  3

• which R and ggtree should be installed?

  #29 opened 4 years ago by alantsangmb
  5

• re fimH typing not performed

  #26 opened 4 years ago by bhclement
  13

• Tormes: ERROR: could not find input file

  #25 opened 4 years ago by Stigimoloch
  2

• report rendering and input/output directories

  #24 opened 4 years ago by dkarig
  1

• Error(s) when running - many -"no such files or directory" and others

  #23 opened 4 years ago by shawndy
  4