Pinned Repositories
2025_BINFdev
Technical Assignment
30daysofcharts2023
Charts made for 30 Days of Charts 2023 Challenge
Baltimore_Gentrification
A recreation of the cake and tensors project I did in arcGIS using open source geospatial tools
Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics data
generative-ai-for-beginners
18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
gnomix
A fast, scalable, and accurate local ancestry method, with updated requirements.txt file
hello-world
Github Tutorial Repos
how-to-microbiome
Repository of microbiome / microbial ecology resources
n-of-1
Repository of code for analysis of n of 1 data
nmshahir's Repositories
nmshahir/2025_BINFdev
Technical Assignment
nmshahir/30daysofcharts2023
Charts made for 30 Days of Charts 2023 Challenge
nmshahir/Baltimore_Gentrification
A recreation of the cake and tensors project I did in arcGIS using open source geospatial tools
nmshahir/Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
nmshahir/decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics data
nmshahir/generative-ai-for-beginners
18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
nmshahir/gnomix
A fast, scalable, and accurate local ancestry method, with updated requirements.txt file
nmshahir/hello-world
Github Tutorial Repos
nmshahir/how-to-microbiome
Repository of microbiome / microbial ecology resources
nmshahir/Human_Virome_analysis
nmshahir/MAD
Microbial Aerotolerance Database
nmshahir/metaboliteassoc
Causal Associations from Metabolite Data
nmshahir/metagenomicsTools
Tools for metagenomics analysis
nmshahir/microbiome_helper
An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
nmshahir/MutaCheck
Testing this pipeline
nmshahir/n-of-1
Repository of code for analysis of n of 1 data
nmshahir/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
nmshahir/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
nmshahir/TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
nmshahir/nf-core_modules_update_template
Repository to host tool-specific module files for the Nextflow DSL2 community!
nmshahir/rusty_recipe_manager
playing with rust and webscraping
nmshahir/sql_advent_2024
SQL Advent Solution
nmshahir/sun_and_shadow_lorebook
Collection of infrequently lore and references updated from campaign so I can stop asking Ari "who is X? again"
nmshahir/tagore2
The script presents a simple way to visualize features on human and other species chromosome ideograms
nmshahir/tidytuesday
Collection of visualizations and data analyses from rfordatascience tidy tuesday
nmshahir/viGEN
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
nmshahir/VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.