Pinned Repositories
aedes
AEDES is a graphic user interface (GUI) based tool for region of interest (ROI) analysis of (mainly) MRI images
AIDAmri
Atlas-based processing pipeline for structural and functional MRI mouse data
along-tract-stats
A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
asl-mricloud
ASL-MRICloud is hosted on braingps.mricloud.org to facilitate automated online processing of ASL MRI data.
awake-fMRI-3d-models
These models are for awake fMRI (mouse)
awesome-cheatsheets
👩💻👨💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
Bruker
matlab files for reading and processing Bruker MRI data
chart_demo
Diffusion-tensor-images-of-rat-brain-processing
Skull-stripping and bias correction in DTI images of rat brains
ERRM
Code for the Extended Reference Region Model for DCE-MRI (NBM 3924)
nmskhan's Repositories
nmskhan/AIDAmri
Atlas-based processing pipeline for structural and functional MRI mouse data
nmskhan/aedes
AEDES is a graphic user interface (GUI) based tool for region of interest (ROI) analysis of (mainly) MRI images
nmskhan/asl-mricloud
ASL-MRICloud is hosted on braingps.mricloud.org to facilitate automated online processing of ASL MRI data.
nmskhan/awake-fMRI-3d-models
These models are for awake fMRI (mouse)
nmskhan/awesome-cheatsheets
👩💻👨💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
nmskhan/Bruker
matlab files for reading and processing Bruker MRI data
nmskhan/chart_demo
nmskhan/Diffusion-tensor-images-of-rat-brain-processing
Skull-stripping and bias correction in DTI images of rat brains
nmskhan/ERRM
Code for the Extended Reference Region Model for DCE-MRI (NBM 3924)
nmskhan/fMRI_Analysis
Dump of all codes for fMRI analysis using SPM, roi analysis using Marsbar, Grey matter 3D ASL, Eprime data analysis
nmskhan/FunConPy
Resting State fMRI Functional Connectivity Pipeline
nmskhan/Functional-Connectivity-Analysis
Brain Connectivity Analysis on FMRi data in a memory task performed at Baycrest Hospital
nmskhan/hMRI_mouse
Copy of hMRI Toolbox from (https://github.molgen.mpg.de/hMRI-group/Toolbox/wiki) adapted for mouse analysis
nmskhan/hyperpolarized-mri-toolbox
The goal of this toolbox is to provide research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB code, and includes code for designing radiofrequency (RF) pulses, readout gradients, and data reconstruction.
nmskhan/Longitudinal-Monitoring-of-Aging-Mouse-Brain
nmskhan/MAGeTbrain
Multiple Automatically Generated Templates brain segmentation algorithm
nmskhan/mouse-brain-atlas
Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
nmskhan/mouse-brain-atlases_generator
Generate a package-manager-friendly mouse brain atlases collection.
nmskhan/mousemorph
Tools for MRI mouse brain morphometry
nmskhan/MouseMRIPrep
Scripts to preprocess mouse MRI/fMRI/dMRI
nmskhan/nf-core-mrimorph
UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data
nmskhan/nf-core-mrimorph-1
UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data
nmskhan/Preclinical-fMRI-registrations
A pipeline to register denoised preclinical fMRI scans to template space
nmskhan/PulseqT1T2Mapping
Contains pulseq definitions for T1 (VFA GRE), T2 (MESE) mapping sequences.
nmskhan/rodent_rsnetworks
A pipeline for rodent functional MRI analysis
nmskhan/rs-fMRI
pre-processing for rs fMRI data aquired using pCASL sequence
nmskhan/rsfMRI
My research project about functional brain connectivity analysis based on time-series data analysis and statistical modeling
nmskhan/rsFMRI-preprocessing
Preprocessing pipeline for resting state MRI data
nmskhan/SAMRI
Small Animal Magnetic Resonance Imaging via Python.
nmskhan/t1-mapping
Efficient Cardiac MRI T1 T2 Mapping with the Levenberg-Marquardt method