noamteyssier/fxtools

Issues

• setup dependabot

  #75 opened 4 months ago by noamteyssier
  0

• add a feature for converting CSV to fasta

  #73 opened 5 months ago by noamteyssier
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• include disambiseq as a method

  #71 opened 5 months ago by noamteyssier
  0

• update dependencies and fix lints

  #69 opened 8 months ago by noamteyssier
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• Include an option on sgrna-table to split transcription start sites

  #67 opened 8 months ago by noamteyssier
  0

• Swap parser backend to needletail

  #66 opened 10 months ago by noamteyssier
  0

• add docs for multiplex

  #65 opened a year ago by noamteyssier
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• add a multiplex option

  #63 opened a year ago by noamteyssier
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• add sequence print to cat

  #61 opened a year ago by noamteyssier
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• Add a clip function to select internal regions within sequences

  #59 opened a year ago by noamteyssier
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• Build up a cat command

  #56 opened a year ago by noamteyssier
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• Build up a take command

  #55 opened a year ago by noamteyssier
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• incorporate a sampling feature

  #52 opened a year ago by noamteyssier
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• add filter to docs page by adding it to summary

  #50 opened a year ago by noamteyssier
  1

• Incorporate a count feature

  #51 opened a year ago by noamteyssier
  0

• Set up num_threads and compression level as global arguments

  #48 opened a year ago by noamteyssier
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• Add a filter command

  #46 opened a year ago by noamteyssier
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• write up installation instructions

  #44 opened a year ago by noamteyssier
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• add in t2g command

  #42 opened a year ago by noamteyssier
  0

• Make Pipeable

  #15 opened a year ago by noamteyssier
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• update to newer version of fxread

  #39 opened a year ago by noamteyssier
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• update fxread version and implement a fix feature

  #37 opened a year ago by noamteyssier
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• add flag on unique to allow invalid nucleotides

  #35 opened a year ago by noamteyssier
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• fix cmake dependency bug

  #26 opened a year ago by noamteyssier
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• write up an mdbook

  #25 opened a year ago by noamteyssier
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• add gzip compression flag

  #31 opened a year ago by noamteyssier
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• fix qual bug in sort

  #29 opened a year ago by noamteyssier
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• include a sort function

  #27 opened a year ago by noamteyssier
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• Allow for gzip writer output

  #23 opened a year ago by noamteyssier
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• allow for left-aligned offsets in extract variable

  #21 opened 2 years ago by noamteyssier
  0

• add in dynamic trimming

  #19 opened 2 years ago by noamteyssier
  0

• Bug in extract variable where sequences are printed empty on no contiguity

  #17 opened 2 years ago by noamteyssier
  0

• find longest contiguous region in cases where there is split contiguity

  #13 opened 2 years ago by noamteyssier
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• move from spinners to spinoff

  #11 opened 2 years ago by noamteyssier
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• extract variable region

  #9 opened 2 years ago by noamteyssier
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• update internals to use fxread=0.2

  #7 opened 2 years ago by noamteyssier
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• add reverse complement functionality

  #5 opened 2 years ago by noamteyssier
  0

• Lower to Upper

  #3 opened 2 years ago by noamteyssier
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• add in sgRNA -> gene name parser

  #1 opened 2 years ago by noamteyssier
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