nodrogluap
Bioinformatics Manager, CSM Center for Health Genomics and Informatics
University of Calgary
Pinned Repositories
damage
Estimate nucleobase damage from sequencing substitution artifacts
framefix
Adjust a FastA DNA genome file's ORFs to correct frameshifts by best Diamond match
GenomeID
A scheme for calculating a unique identifier for any human DNA sample with genome/exome data
gumshoe
Supplemental Statistical Tests and Utilities for Kallisto/Sleuth RNASeq Analysis
maxwell
Fast signal-level matching for direct RNA nanopore sequencing
MinNO
Automatically stop a MinION sequencing experiment after a specific amount of data has been collected.
nanostripper
Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria
OpenDBA
GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
pokay
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
tamor
Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
nodrogluap's Repositories
nodrogluap/OpenDBA
GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
nodrogluap/nanostripper
Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria
nodrogluap/pokay
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
nodrogluap/framefix
Adjust a FastA DNA genome file's ORFs to correct frameshifts by best Diamond match
nodrogluap/tamor
Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
nodrogluap/MinNO
Automatically stop a MinION sequencing experiment after a specific amount of data has been collected.
nodrogluap/GenomeID
A scheme for calculating a unique identifier for any human DNA sample with genome/exome data
nodrogluap/gumshoe
Supplemental Statistical Tests and Utilities for Kallisto/Sleuth RNASeq Analysis
nodrogluap/maxwell
Fast signal-level matching for direct RNA nanopore sequencing
nodrogluap/damage
Estimate nucleobase damage from sequencing substitution artifacts
nodrogluap/djerba
Create cancer bioinformatics reports from metadata and workflow output
nodrogluap/oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
nodrogluap/real
Reproduction number Estimation Accounting for Lead time
nodrogluap/nybbler
Targeted subsampling of SARS-CoV-2 genome sequence ensembles used in genomic epidemiology
nodrogluap/rnaspace
RNA Sequence Picking After Cutting Enzymatically
nodrogluap/bioconda-recipes
Conda recipes for the bioconda channel.
nodrogluap/covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
nodrogluap/covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
nodrogluap/DTWA
nodrogluap/ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
nodrogluap/ncov
Nextstrain build for novel coronavirus (nCoV)
nodrogluap/ncov-ingest
A pipeline that can fetch the latest nCoV data from GISAID, transform it, and put it on S3
nodrogluap/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
nodrogluap/nextclade
Assign SARS-CoV-2 clades in the browser
nodrogluap/sars-cov-2-transcriptome
Supplemental code for "the architecture of SARS-CoV-2 transcriptome" paper
nodrogluap/SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
nodrogluap/static-museum-audio-guide
A Jekyll static site generator theme for building lightweight audio tours for exhibitions or museums.
nodrogluap/taiyaki
Training models for basecalling Oxford Nanopore reads
nodrogluap/TriMiss
Evaluate mismatch sensitivity of every 3-mer context in a genome to PCR primers
nodrogluap/viriation
Viral genome variant annotation using natural language processing