Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
configs
Config files used to define parameters specific to compute environments at different Institutions
containers
Bioinformatics containers
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
MACS
MACS -- Model-based Analysis of ChIP-Seq
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
rnavar
gatk4 RNA variant calling pipeline
noirot's Repositories
noirot/bioconda-recipes
Conda recipes for the bioconda channel.
noirot/configs
Config files used to define parameters specific to compute environments at different Institutions
noirot/containers
Bioinformatics containers
noirot/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
noirot/MACS
MACS -- Model-based Analysis of ChIP-Seq
noirot/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
noirot/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
noirot/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
noirot/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
noirot/rnavar
gatk4 RNA variant calling pipeline
noirot/upsetjs-next
😠 UpSet.js - a set visualization library for rendering UpSet Plots (a JavaScript re-implementation of UpSet(R) by Lex et al), Euler Diagrams, Venn Diagrams, and Karnaugh Maps