Citrus Readme
Citrus is a package for identifying clusters of cells in multidimensional flow cytometry data associated with an experimental or clincal endpoint of interest.
Getting Started
- Installation instructions available on the Installing Citrus Page.
- Instructionson how to configure Citrus for your data available on the Getting Started Page.
- Example analyses available on the Examples Page.
- See the Citrus FAQ for questions related to building and/or running Citrus.
Version History
- Version 0.08
- - Completely refactored codebase that is hopefully much more intuitive.
- - Documentation added.
- Version 0.07
- - Multiclass analysis available for SAM and Nearest Shrunken Centroid models
- - Small GUI enhancements
- Version 0.06
- - Changed feature names
- - Many new graphical outputs for result visualization
- Version 0.05
- - Adding support for SAM (two-class only)
- Version 0.04
- - Adding support for Survival analysis (glmnet model only)
- Version 0.03
- - Switching to ggplot2 and adding feature heiarachy plots
- Version 0.02
- - Now includes shiny web GUI for running citrus
- Version 0.01
- - Initial Citrus Test Code