Feature calculation takes too long
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cbligaard commented
Hi Citrus-team,
I have an experiment with a 120 CyTOF files and I would like to run Citrus to analyze them. I can manage to get through the clustering by downsampling, but the citrus.calculateFoldFeatureSet just never finishes for me (I have given it more than 24 hours). Do you have any suggestions for how I can get beyond this?
Best,
Christina
rbruggner commented
Hi Christina,
Is the CPU "doing something" during that long runtime (e.g. is it still calculating features/values) or is the related CPU usage "zero" when the program appears to be running definitely?