nolanlab/citrus

Error in xy.coords(x, y, xlabel, ylabel, log) :

Opened this issue · 10 comments

mcpitman2 commented

Hi, I'm completely new to R. I have installed and run Citrus 0.8 on R 4.0.0 using the shiny GUI. However, every time I try to run an analysis I get an error message within R saying "Error in xy.coords(x, y, xlabel, ylabel, log) :
'x' and 'y' lengths differ
In addition: Warning message:
In if (class(x) == "dist") { :
the condition has length > 1 and only the first element will be used"

Any suggestion as to what I could be doing wrong? It happens even when I follow all of the instructions at https://github.com/nolanlab/citrus/wiki/Synthetic-Example-1

Thanks, Matthew

nvall commented

Hi Matthew, I encountered the same issue this week. You may try to use an older version of R, it works with 3.6.3. Hope it will help.

  • 👍1
mcpitman2 commented

Thanks very much nvall. Yes, it works with version 3.6.3 for me too.

Kind regards

Matthew

chsher commented

Hi, how did you install Rclusterpp? I am using version 3.6.3 and receive the following error message when I try to install Rclusterpp:

Warning message:
package ‘Rclusterpp’ is not available (for R version 3.6.3)

mcpitman2 commented

I just followed the instructions at https://github.com/nolanlab/citrus/wiki/Installing-Citrus

Specifically:
install_github("nolanlab/Rclusterpp")

I don't recall having any issues.

JC19C commented

Hi,
Do you have an insight about the cause of the issue here (FCS file format?), or an alternative solution?

As I have the same error on R 4.1.3, and a RStudio fatal error with crash on R 3.6.3

Thanks for your help!
J

rbruggner commented

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

JC19C commented
nvall commented

Hi, Do you have an insight about the cause of the issue here (FCS file format?), or an alternative solution? As I have the same error on R 4.1.3, and a RStudio fatal error with crash on R 3.6.3

@JC19C to avoid RStudio crashes, you should consider run R directly from a terminal and go back to your v4 when you're done with Citrus. Try RSwitch software to change you current default R version.

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

@rbruggner send me a message if you need help.

Best,
Nicolas

rbruggner commented

@JC19C Give the latest master branch a pull and lmk if it fixes the issue?

JC19C commented