notestaff

Computational biologist

MerckCambridge, MA

Pinned Repositories

cms2
CMS 2.0
Language:Python00
cosi2
Fast coalescent simulator with selection
Language:C++51
dockstore-tool-cms2
Language:Python01
viral-ngs
Viral genomics analysis pipelines
Language:Python187 29 23967
dockstore-tool-cms2
Language:Python0 1 00
elu
Emacs Lisp Utilities
Language:Emacs Lisp22
git-annex-remote-ldir
git-annex external special remote for local dirs under a given path
20
Org-balance-old
Emacs Org mode extension to balance resources among different areas of life.
Language:Emacs Lisp22
org-mode-ilya
my changes to org-mode
Language:Emacs Lisp20

notestaff's Repositories

notestaff/dockstore-tool-cms2
Language:Python0 1 00
notestaff/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell2 0
notestaff/cms2-staging
CMS2 wdl files corresponding to specific commits in the dockstore-tool-cms2 repository.
Language:Python3 0
notestaff/cromwell-feedstock
A conda-smithy repository for cromwell.
Language:Python1 0
notestaff/cue
Deep learning framework for SV calling and genotyping
Language:Jupyter Notebook0 0
notestaff/cyrus-sasl-feedstock
A conda-smithy repository for cyrus-sasl.
Language:Batchfile1 0
notestaff/editdistance-feedstock
A conda-smithy repository for editdistance.
0 0
notestaff/fiss
FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
Language:Python1 0
notestaff/frozen
a header-only, constexpr alternative to gperf for C++14 users
Language:C++0 0
notestaff/git-annex-feedstock
A conda-smithy repository for git-annex.
Language:Shell2 0
notestaff/gnupg-feedstock
A conda-smithy repository for gnupg.
1 0
notestaff/gnutls-feedstock
A conda-smithy repository for gnutls.
Language:Shell1 0
notestaff/iSAFE
Pinpoints the mutation favored by selection
Language:Python1 0
notestaff/lighttpd-feedstock
A conda-smithy repository for lighttpd.
Language:Shell2 0
notestaff/LRSIM
10x Genomics Reads Simulator
Language:C0 0
notestaff/mbedtls-feedstock
A conda-smithy repository for mbedtls.
Language:Shell0 0
notestaff/moreutils-feedstock
A conda-smithy repository for moreutils.
Language:Shell1 0
notestaff/NACHO
NAnostring quality Control dasHbOard
Language:R0 0
notestaff/npth-feedstock
A conda-smithy repository for npth.
Language:Shell2 0
notestaff/pbsim3
PBSIM3: a simulator for all types of PacBio and ONT long reads
Language:C++0 0
notestaff/r-base-feedstock
A conda-smithy repository for r-base.
Language:Shell1 0
notestaff/rnaseq-nf
A proof of concept of RNAseq pipeline
Language:Nextflow1 0
notestaff/scar
scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
Language:Python1 0
notestaff/scAR-reproducibility
Scripts to reproduce the results of scAR manuscript 'Probabilistic modeling of ambient noise in single-cell omics data'
Language:Jupyter Notebook1 0
notestaff/sdsl-lite-feedstock
A conda-smithy repository for sdsl-lite.
Language:Shell0 0
notestaff/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
notestaff/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python2 0
notestaff/tar-feedstock
A conda-smithy repository for tar.
Language:Shell2 0
notestaff/w3m-feedstock
A conda-smithy repository for w3m.
Language:Shell2 0
notestaff/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Language:R1 0