Running population genomics analysis of bacteria using Pegasus workflow (workflow of workflows) utilizing High Performance Computing.

Running the workflow on HCC, https://hcc.unl.edu:

To run the worflow on HCC, please clone the repo. All the analysis are run from the repo directory. The user needs to do only 2 modifications:

replace BacGenPop in tx.txt and rc.txt with the absolute path of the current directory
add the SRA ids in sra_ids.txt