npcooley
Software Engineer working on fundamental bioinformatics challenges. Reformed chemist. Tragically overconfident karaoke singer.
Pittsburgh
Pinned Repositories
AAClassification
BioC2018
BioC 2018: Where Software and Biology Connect
COG_to_TAX
A simple workflow for building IDTaxa training sets from NCBI COGs
Containers
Docker containers for testing and production locally and on the OSG
cvmfs-singularity-sync
Scripts to synchronize Singularity images to a CVMFS repository.
FindHomology
NMDC_Test
Responses to some pre-interview questions
npcooley.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Pseudogenes
Associated scripts and data for a manuscript.
SynExtend
Tools for working with synteny objects
npcooley's Repositories
npcooley/SynExtend
Tools for working with synteny objects
npcooley/AAClassification
npcooley/BioC2018
BioC 2018: Where Software and Biology Connect
npcooley/COG_to_TAX
A simple workflow for building IDTaxa training sets from NCBI COGs
npcooley/Containers
Docker containers for testing and production locally and on the OSG
npcooley/cvmfs-singularity-sync
Scripts to synchronize Singularity images to a CVMFS repository.
npcooley/FindHomology
npcooley/NMDC_Test
Responses to some pre-interview questions
npcooley/npcooley.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
npcooley/Pseudogenes
Associated scripts and data for a manuscript.
npcooley/Heron
npcooley/Search_Tutorial
A sequence similarity searching tutorial with DECIPHER and minimal dependencies.
npcooley/SynContainer
Dockerfile for the R package SynExtend
npcooley/SynExtendWorkflow
A brief example of how to use SynExtend locally to predict orthologous gene pairs