All output generated during the walkthrough can be found in the treasure chest. The easiest way to get all of that is to download the entire repository.
Presentation:
You can see the actual workshop walkthrough at
https://gibbons-lab.github.io/isb_course_2021/16S. Press ? to get a list
of available live options such as slide overviews and speaker mode. Note that
some slides are grouped vertically, you can navigate the presentation using
the directional buttons on your keyboard.
A PDF version (lacks the output previews) is also available.
Presentation: 
You can see the actual workshop walkthrough at
https://gibbons-lab.github.io/isb_course_2021/models. Press ? to get a list
of available live options such as slide overviews and speaker mode. Note that
some slides are grouped vertically, you can navigate the presentation using
the directional buttons on your keyboard.
A PDF version (lacks the output previews) is also available.
Source code is licensed under the Apache License 2.0.
Content and artwork is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
The presentation itself is a webpage hosted on GitHub. Basically, it renders dynamically from a markdown file that includes the course. Editing the markdown file is sufficient to change the content of the presentation.
See the reveal docs for more info.
Open a terminal in the docs folder in the repo and use:
python -m http.serverThis will preview the talks at localhost:8000/16S and localhost:8000/models in a browser. Editing the
markdown and reloading the page should be enough.
To generate a PDF of the course, open up the website in chromium or chrome and
append ?print-pdf to the address. For instance, if you ran it locally as
described above, open localhost:8000/16S?print-pdf in the browser. Then, choose
'print to PDF' (choose margins: none).