Pinned Repositories
alleleFreqs
Bioinformatics_training
Some training material for the Bardin lab members
cnvPlotteR
Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
mutationProfiles
Extract and explore snv data
nf-lohcator
svBreaks
Analysis and plotting functions for structural variant breakpoint data
svParser
Explore and filter structural variant calls from Lumpy and Delly VCF files
svSupport
A tool to find reads supporting/opposing structural variant breakpoints
WhatStat
A tool to parse and visualise your WhatsApp group chats
whoami
Perform sentiment analysis on all of your sent Gmail messages
nriddiford's Repositories
nriddiford/cnvPlotteR
Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
nriddiford/svParser
Explore and filter structural variant calls from Lumpy and Delly VCF files
nriddiford/WhatStat
A tool to parse and visualise your WhatsApp group chats
nriddiford/mutationProfiles
Extract and explore snv data
nriddiford/svBreaks
Analysis and plotting functions for structural variant breakpoint data
nriddiford/svSupport
A tool to find reads supporting/opposing structural variant breakpoints
nriddiford/whoami
Perform sentiment analysis on all of your sent Gmail messages
nriddiford/Bioinformatics_training
Some training material for the Bardin lab members
nriddiford/Investigating-structural-variation-in-cancer-genomes
My lab book for current project: Identifying structural variation in WGS data
nriddiford/nf-lohcator
nriddiford/Riddiford_et_al_2020
nriddiford/vcfParse
Parse VCF files to allow easy filtering and analysis
nriddiford/alleleFreqs
nriddiford/ActinArt
Development for the Actin Art project website
nriddiford/blast-example
A basic blast pipeline using nextflow
nriddiford/cigar_compare
nriddiford/Cis-reg-binding-finder
An ongoing project to locate and score TF responsive elements in genome
nriddiford/cv
A list of publications/presentations/posters etc
nriddiford/deconstructSigs
deconstructSigs
nriddiford/forkStaller
Simulate fork stalling events in a genome
nriddiford/gopher
Gene Ontology and Pheatmapper
nriddiford/Mutation_profiles
nriddiford/nf-core-lohcator
nriddiford/nriddiford.github.io
A website for the Actin Art project
nriddiford/Perl-scripts
General usage Perl script
nriddiford/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
nriddiford/Scales
nriddiford/svMech
Predict mechanism underlying structural variants
nriddiford/textor
nriddiford/winlow
Comparing windows for regions of different coverage between tumour and normal bams