nrockweiler
Compbio postdoctoral fellow in Steve McCarroll's lab @ the Broad Institute of MIT and Harvard.
@broadinstitute Boston
Pinned Repositories
bam2filtered_readcounts
bcall
bioinformatics_wkshp_washu
chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
eg
EpiGenome Gateway - WashU EpiGenome Browser
gtex-pipeline
GTEx Consortium data production and analysis pipelines
Mallet
mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
nrockweiler.github.io
Personal website for Nicole Rockweiler
nrockweiler.github.io2
nrockweiler's Repositories
nrockweiler/bam2filtered_readcounts
nrockweiler/bcall
nrockweiler/bioinformatics_wkshp_washu
nrockweiler/chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
nrockweiler/eg
EpiGenome Gateway - WashU EpiGenome Browser
nrockweiler/gtex-pipeline
GTEx Consortium data production and analysis pipelines
nrockweiler/Mallet
nrockweiler/mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
nrockweiler/nrockweiler.github.io
Personal website for Nicole Rockweiler
nrockweiler/nrockweiler.github.io2
nrockweiler/nrockweiler.github.io3
nrockweiler/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
nrockweiler/RockweilerEtAl
Code to reproduce findings from Rockweiler et al. study of somatic mutation in GTEx tissues
nrockweiler/SComatic
A tool for detecting somatic variants in single cell data
nrockweiler/signac
R toolkit for the analysis of single-cell chromatin data
nrockweiler/test3