Pinned Repositories
hgsc_rnaseq_cluster
hgsc_rnaseq_clustering_pipeline
aml_cfdna_atac
Using BuDDI to integrate cfDNA and ATAC data from AML samples to identify cell of origin
buddi
BuDDI model implementation
buddi_analysis
Analysis notebooks for the BuDDI manuscript
nature_news_disparities
Analysis pipeline for Nature news articles
popusim
A framework for performing simulations of agents in teams.
RiboDiff
RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
ssPATHS
pathway scoring method, bioconductor version
nrosed's Repositories
nrosed/nature_news_disparities
Analysis pipeline for Nature news articles
nrosed/popusim
A framework for performing simulations of agents in teams.
nrosed/RiboDiff
RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
nrosed/aml_cfdna_atac
Using BuDDI to integrate cfDNA and ATAC data from AML samples to identify cell of origin
nrosed/buddi
BuDDI model implementation
nrosed/buddi_analysis
Analysis notebooks for the BuDDI manuscript
nrosed/buddi_atac
nrosed/CBIS_ATAC_2022
repository for two projects from the Colorado Biomedical Informatics Summer Fellowship Program
nrosed/cfDNA_atac_demo
Code to show preliminary connection between scATAC-seq and cfDNA
nrosed/disparities_opinion
nrosed/docker_r_demo
Demo of how to make a docker image for old R packages
nrosed/hgsc_subtypes
Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four
nrosed/nature_news_manuscript
nrosed/nrosed.github.io
Personal website
nrosed/sc_bulk_ood
nrosed/ssPATHS
personal version of ssPATHS
nrosed/sspaths_manubot