Pinned Repositories
gwaR
A collection of R functions to conduct downstream GWAS analysis for arabidopsis thaliana.
16S_Metagenomics_Coursefiles
A public version of the teaching repository, scrubbed to not include the actual data.
aradeepopsis-1
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
BxSyncomMs
Knoch_et_al_transcriptomes
Scripts and files for the transcriptome analysis for Knoch et al., 2022
nf-annotate
(Plant) genome annotation pipeline
nf-genomeassembly
Nextflow pipeline to assemble genomes from long reads.
nf-hrp
nf-plotsv
Compare genomes using minimap2, SyRi and plotsr in a nextflow pipeline
syri_gggenomes
Plot syri output via gggenomes
nschan's Repositories
nschan/nf-plotsv
Compare genomes using minimap2, SyRi and plotsr in a nextflow pipeline
nschan/nf-genomeassembly
Nextflow pipeline to assemble genomes from long reads.
nschan/Knoch_et_al_transcriptomes
Scripts and files for the transcriptome analysis for Knoch et al., 2022
nschan/nf-annotate
(Plant) genome annotation pipeline
nschan/nf-hrp
nschan/16S_Metagenomics_Coursefiles
A public version of the teaching repository, scrubbed to not include the actual data.
nschan/aradeepopsis-1
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
nschan/BxSyncomMs
nschan/configs
Config files used to define parameters specific to compute environments at different Institutions
nschan/genomeassembler
nschan/gggenomes
A grammar of graphics for comparative genomics
nschan/HRP
The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome assemblies.
nschan/syri_gggenomes
Plot syri output via gggenomes
nschan/jubilant-barnacle
nschan/models
Models and examples built with TensorFlow
nschan/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
nschan/nextflow
A DSL for data-driven computational pipelines
nschan/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nschan/nschan
Config files for my GitHub profile.
nschan/PCA_Visual
This repository contains a visual approach to Principal Component Analysis of more than three vectors
nschan/PCNA_phylogenetics
nschan/SLR
Scaffolding using long reads obtained by the third generation sequencing technologies.
nschan/test-datasets
Test data to be used for automated testing with the nf-core pipelines