Pinned Repositories
gokit
Enabling energy landscape exploration of proteins
AB-Bind-Database
Antibody Binding Mutational Database
active-learning
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold
Open source code for AlphaFold.
annual-report-NIC
AZCourse_Winter2022
gokit
Enabling energy landscape exploration of proteins
Gordian_knot_tutorial
openmmtools
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
nsridhar1's Repositories
nsridhar1/AZCourse_Winter2022
nsridhar1/gokit
Enabling energy landscape exploration of proteins
nsridhar1/openmmtools
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
nsridhar1/active-learning
nsridhar1/alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
nsridhar1/alphafold
Open source code for AlphaFold.
nsridhar1/antiberta
Public repository describing training and testing of AntiBERTa.
nsridhar1/antiref
AntiRef: reference clusters of human antibody sequences
nsridhar1/DeepAb
Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
nsridhar1/equiformer-pytorch
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
nsridhar1/HEAL
nsridhar1/Icolos
Icolos: A workflow manager for structure based post-processing of de novo generated small molecules
nsridhar1/idpgan
nsridhar1/IgFold
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
nsridhar1/ImmuneBuilder
Predict the structure of immune receptor proteins
nsridhar1/infretis
A python library for replica exchange transition interface sampling with infinite swaps
nsridhar1/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
nsridhar1/MLAB-Stuctural_Biology
nsridhar1/molearn
protein conformational spaces meet machine learning
nsridhar1/open-data-registry
A registry of publicly available datasets on AWS
nsridhar1/openfold
Trainable PyTorch reproduction of AlphaFold 2
nsridhar1/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
nsridhar1/PA-Graph-Transformer
nsridhar1/perses
Experiments with expanded ensembles to explore chemical space
nsridhar1/ProDAR
Implementation of Protein Dynamically Activated Residues (ProDAR) for dyamics-informed protein function prediction/annotation
nsridhar1/ProteinMPNN
Code for the ProteinMPNN paper
nsridhar1/RefineGNN
nsridhar1/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
nsridhar1/se3-transformer-pytorch
Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration with eventual Alphafold2 replication.
nsridhar1/weblogo
WebLogo 3: Sequence Logos redrawn