nthndy
postdoc studying single-cell heterogeneity of Tuberculosis infection using timelapse microscopy, deep learning image analysis and Bayesian multi-object tracking
The Francis Crick InstituteLondon
Pinned Repositories
btrack
Bayesian multi-object tracking
CAFI
Combined Repos from DAIN and Zooming SlowMo
cell-comp-analysis
Analysis for cell competition phd project
cellx
DL/ML tools for CellX project
cnn-annotator
Annotate microscopy images for CNN classifier
hologram_analysis
first ever git repo so be nice - analysis script (originally in matlab) designed to take a holographic microscopy time-lapse image and calculate the dry mass over time of each single cell
homuncu_loc
Single-Cell Segmentation and Tracking for the Lung-on-a-Chip project
octopuslite-reader
reader for octopuslite data
protocols
Lab protocols
segment-classify-track
nthndy's Repositories
nthndy/hologram_analysis
first ever git repo so be nice - analysis script (originally in matlab) designed to take a holographic microscopy time-lapse image and calculate the dry mass over time of each single cell
nthndy/homuncu_loc
Single-Cell Segmentation and Tracking for the Lung-on-a-Chip project
nthndy/protocols
Lab protocols
nthndy/segment-classify-track
nthndy/btrack
Bayesian multi-object tracking
nthndy/CAFI
Combined Repos from DAIN and Zooming SlowMo
nthndy/cell-comp-analysis
Analysis for cell competition phd project
nthndy/CellComp
Python Scripts to my Cell Competition project contribution. Looking at pure WT cell populations to identify patterns of CSC.
nthndy/cellx
DL/ML tools for CellX project
nthndy/cellx-predict
Explainable AI model of cell behavior
nthndy/cnn-annotator
Annotate microscopy images for CNN classifier
nthndy/ipls-workshop
Setup instructions for the IPLS workshop April 2021
nthndy/octopuslite-reader
reader for octopuslite data
nthndy/Cask
Cell competition Analysis using Spatiotemporal K-functions
nthndy/DAIN
Depth-Aware Video Frame Interpolation (CVPR 2019)
nthndy/jSPIM
ImageJ macro for realigning multidimensional single plane illumination microscopy data
nthndy/macrohetest
test
nthndy/simple-unet
nthndy/unet_segmentation_metrics
Metrics for determining segmentation accuracy