nukopy/gene-searcher

gene-searcher

Web application to collect and summarize gene information from target databases

• URL
  • gene-searcher-beta.streamlit.app

Features

• Search gene information from target databases by gene name, Ensembl ID, and so on.
• Show summary information of the gene
• Visualize gene expression data
• Download gene expression data as CSV file

Target databases

• The Human Protein Atlas
  • Tissue RNA Expression (e.g. IL2RA)
  • Cell line RNA Expression (e.g. IL2RA)
• DICE | Database of Immune Cell eQTLs, Expression, Epigenomics
• BioGPS - your Gene Portal System
• BenchSci: Reimagining Research

Setup

Install Python 3.11.7

Official installer is here

Install Poetry

pip install poetry

Install dependencies

poetry install

Run

Run the following command and open http://localhost:8501/ on your browser.

streamlit run app/main.py