Pinned Repositories
metabinkit
Set of programs to perform taxonomic binning.
atlas_gsa
Gene set analysis based on fisher exact test
Absolut
Unconstrained lattice antibody-antigen bindings generator
bin-parser
General binary file parser.
bioconda-recipes
Conda recipes for the bioconda channel.
fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
irap
integrated RNA-seq Analysis Pipeline
logchem
LogCHEM is a tool for discriminative interactive mining of chemical fragments.
msi
sv2gf
nunofonseca's Repositories
nunofonseca/irap
integrated RNA-seq Analysis Pipeline
nunofonseca/fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
nunofonseca/msi
nunofonseca/sv2gf
nunofonseca/logchem
LogCHEM is a tool for discriminative interactive mining of chemical fragments.
nunofonseca/Absolut
Unconstrained lattice antibody-antigen bindings generator
nunofonseca/bin-parser
General binary file parser.
nunofonseca/bioconda-recipes
Conda recipes for the bioconda channel.
nunofonseca/BioPhi
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
nunofonseca/biophi.dichlab.org
Deployment repository for biophi.dichlab.org
nunofonseca/Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
nunofonseca/flask-boilerplate
Boilerplate template for a Python Flask application with Flask-SQLAlchemy, Flask-WTF, Fabric, Coverage, and Bootstrap
nunofonseca/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
nunofonseca/icgc_rnaseq_align
nunofonseca/lineagesequencediscovery
Automatically exported from code.google.com/p/lineagesequencediscovery
nunofonseca/loop_modeling
A loop modeling benchmark capture containing the benchmark dataset and benchmarked protocol captures.
nunofonseca/ML-For-Beginners
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
nunofonseca/pipelines-api-examples
Examples for the Google Genomics Pipelines API.
nunofonseca/propythia
Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.
nunofonseca/pybadges
A Python library for creating Github-style badges
nunofonseca/python-genbadge
A library to generate badges for typical checks (flake8, pytest, coverage, etc.)
nunofonseca/rSynapseClient
The R programmatic interface to Synapse services
nunofonseca/saab_plus
nunofonseca/sadie
The Complete Python Antibody Library
nunofonseca/Sapiens
Sapiens is a human antibody language model based on BERT.
nunofonseca/TeachingMaterial
RNA-seq data analysis practical