Pinned Repositories
BlueHole_manuscript
Scripts for metagenomic analyses performed on Amberjack blue hole samples
BUG-Resources
Collaborative resource for the SIO Bioinformatics Users Group (SIO-BUG)
eDNA-Visualizations
Scripts for visualizing and running statistics on amplicon sequence data sets.
Euk-eDNA-comparison
A comparison of shotgun metagenomes and metabarcoding data for assessing eukaryotic eDNA sequence data
MAMBO
A program to analyze eDNA metabarcoding sequence data from multiple trophic levels to identify drivers and patterns of biodiversity. This program treats read counts as draws from a beta distribution and uses a Bayesian regression model to link principal components of distinct data sets. Inspired by work at the 2023 NOAA/NCAR Hackathon.
Metagenomic_notebooks
Norovirus_manuscript
Scripts used to analyze metagenomes from the Norovirus challenge study
PacBio-Marine-Metagenomes
Scripts for analyzing sequence data from 14 PacBio long-read shotgun metagenomes and matching short-read Illumina metagenomes generated from marine water column samples.
snakemake_anvio
snakemake rules for running anvio
taxize
A taxonomic toolbelt for R
nvpatin's Repositories
nvpatin/MAMBO
A program to analyze eDNA metabarcoding sequence data from multiple trophic levels to identify drivers and patterns of biodiversity. This program treats read counts as draws from a beta distribution and uses a Bayesian regression model to link principal components of distinct data sets. Inspired by work at the 2023 NOAA/NCAR Hackathon.
nvpatin/Norovirus_manuscript
Scripts used to analyze metagenomes from the Norovirus challenge study
nvpatin/BlueHole_manuscript
Scripts for metagenomic analyses performed on Amberjack blue hole samples
nvpatin/BUG-Resources
Collaborative resource for the SIO Bioinformatics Users Group (SIO-BUG)
nvpatin/eDNA-Visualizations
Scripts for visualizing and running statistics on amplicon sequence data sets.
nvpatin/Euk-eDNA-comparison
A comparison of shotgun metagenomes and metabarcoding data for assessing eukaryotic eDNA sequence data
nvpatin/Metagenomic_notebooks
nvpatin/PacBio-Marine-Metagenomes
Scripts for analyzing sequence data from 14 PacBio long-read shotgun metagenomes and matching short-read Illumina metagenomes generated from marine water column samples.
nvpatin/snakemake_anvio
snakemake rules for running anvio