nvrivera
I am a geneticist and my research work focuses on the genetics and genomics of sarcoidosis and rheumatoid arthritis.
Karolinska InstitutetStockholm, Sweden
Pinned Repositories
1000-genomes-genetic-maps
Genetic maps interpolated to sites in the 1000 Genomes project
Ageing-Project
disease and age prediction from methylation data in R
AlveolarCellTypeDeconvolution
DNA methylome-based validation of induced sputum as an effective protocol to study lung immunity: construction of a classifier of pulmonary cell types
ASHG-Workshop-2021
AutoGeneS
CMplot
📊 Circular and Rectangular Manhattan Plot
NG-Circos
post-GWAS-pipeline
A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
TCSC
TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
nvrivera's Repositories
nvrivera/CMplot
📊 Circular and Rectangular Manhattan Plot
nvrivera/post-GWAS-pipeline
A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
nvrivera/TCSC
TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
nvrivera/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
nvrivera/CTGCatalog
A collection of commonly used resources for complex trait genetics.
nvrivera/doc-ANNOVAR
Documentation for the ANNOVAR software
nvrivera/fastman
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
nvrivera/gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
nvrivera/GWASTutorial
GWAS Tutorial for Beginners
nvrivera/loftee
nvrivera/mixer
Causal Mixture Model for GWAS summary statistics
nvrivera/MOFA2
Multi-Omics Factor Analysis
nvrivera/MR-tutorial
Tutorial for running Mendelian Randomization analysis using R
nvrivera/mtag
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
nvrivera/nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
nvrivera/OlinkRPackage
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
nvrivera/PRScs
Polygenic prediction via continuous shrinkage priors
nvrivera/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
nvrivera/rMVP
:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
nvrivera/rstudio-git
My rstudio Git Repository
nvrivera/scATAC-seq_notes
scATAC-seq data analysis tools and papers
nvrivera/SomaDataIO
The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
nvrivera/st_spot_detector
A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
nvrivera/susieR
R package for "sum of single effects" regression.
nvrivera/topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.
nvrivera/workflowr
Organize your project into a research website
nvrivera/workshop-data-visualization-r
Materials for NBIS workshop on data visulalization
nvrivera/workshop-RNAseq
Workshop • Analysis of RNA-seq data
nvrivera/workshop-scRNAseq
Single cell RNA sequencing analysis course
nvrivera/workshop-spatial