Note

In early development and is not yet ready for production use.

CPAC Boutiques Descriptor Collection

This repository contains a collection of Boutiques descriptors for all command line brain imaging tools called by C-PAC. The descriptors are stored in the descriptors directory and are organized by the brain imaging software framework they belong to.

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VSCode JSON schema

Add the following entry to your ./.vscode/settings.json file to enable in-editor JSON schema validation for this project for VSCode.

{
    "json.schemas": [
        {
            "fileMatch": [
                "descriptors/**/*.json"
            ],
            "url": "./schemas/descriptor.schema.json"
        }
    ]
}

Index

Framework Interface
afni Automask
Bandpass
BlurToFWHM
Calc
DegreeCentrality
Despike
Detrend
ECM
LFCD
Maskave
MaskTool
Refit
Resample
ROIStats
SkullStrip
TCat
TCorr1D
TCorrelate
TProject
TShift
TStat
Unifize
Volreg
ants ApplyTransforms
Atropos
DenoiseImage
MultiplyImages
N4BiasFieldCorrection
Registration
c3 C3dAffineTool
freesurfer ApplyVolTransform
Binarize
ReconAll
fsl ApplyMask
ApplyWarp
BET
BinaryMaths
Cluster
ConvertWarp
ConvertXFM
DilateImage
EpiReg
ErodeImage
ExtractROI
FAST
FLAMEO
FLIRT
FNIRT
FUGUE
GLM
ICA_AROMA
ImageMaths
ImageStats
InvWarp
MathsCommand
MCFLIRT
MeanImage
Merge
MultiImageMaths
Overlay
PrepareFieldmap
Randomise
RobustFOV
Slice
Slicer
SmoothEstimate
Split
SwapDimensions
Threshold
UnaryMaths
workbench WBCommand